Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00318 ATGGGGATTCTCGCTGACAGTGGGTCAGGGTCTTCTCTCAAGTTCTTGATTTACGGCCGGACCGGCTGGATTGGCGGTTTGCTTGGCCAGCTCTGTCAACAACAGGGTATTGATTTCACTTATGGCTCTGGCCGTCTAGAGAACCGCGCCTCCCTCGAGGCTGATATCGCCGCTGTCAAGCCCACTCATGTCTTCAACGCCGCTGGAGTCACCGGCCGCCCGAACGTCGACTGGTGCGAATCACATAAGGTCGAGACCATTAGAACCAATGTGGTCGGAACCTTGAGCTTGGCCGATGTGTGCCGTGAGAGAGGGTTGATCTTGATTAATTACGCCACTGGCTGCATTTTCGAGTACGATTCGGTTCATCCTCTTAATTCGGGGATTGGGTTCAAGGAGGATGACATCCCTAATTTTATTGGATCCTTCTATTCCAAGACGAAAGCCATGCAATTGAAATCAGCCATTATTGTGATTGATATTGGGGATTATTTTCAAGCCAAACAGGTCATTTTGATATTGGATTTTTGCTTGGTGGAGCTTTTGAATATCTGGAATGCTAGTACATTCATTAGTAAGGATGGGTTCAATCCAGGCAGCATTGTGGAGGATCTGCTGAAGAACTATGAGAATGTGTGTACCTTGCGCGTTCGGATGCCTATATCCTCAGACTTATCGAACCCTCGCAACTTCATTACGAAGATTACCAGATATGAGAAGGTTGTCGACATCCCGAACTCAATGACGATCTTGGACGAACTCCTCCCGATCTCGATCGAAATGGCGAAAAGAAACCTCACTGGAATATGGAACTTCACCAACCCGGGAGTGGTGAGCCATAATGAGATCTTAGAGATGTACAAGCAATTCATTGACCCCAATTTCACATGGAAGAACTTCACTCTTGAGGAGCAAGCCAAAGTGATCGTCGCCCCGAGGAGCAACAACGAGCTCGATGCGAACAAGTTGAAGAACGAATTCCCTGAACTCTTGTCCATCAAGGACTCGCTCATCAAGTATGTGTTCAAGCCAAATCAGAAAACTTCTGCAGCTTAA 1056 47.44 MGILADSGSGSSLKFLIYGRTGWIGGLLGQLCQQQGIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLSLADVCRERGLILINYATGCIFEYDSVHPLNSGIGFKEDDIPNFIGSFYSKTKAMQLKSAIIVIDIGDYFQAKQVILILDFCLVELLNIWNASTFISKDGFNPGSIVEDLLKNYENVCTLRVRMPISSDLSNPRNFITKITRYEKVVDIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYKQFIDPNFTWKNFTLEEQAKVIVAPRSNNELDANKLKNEFPELLSIKDSLIKYVFKPNQKTSAA 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3287975 3289918 - Lsi09G003180.1 Lsi09g00318 669931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00318 351 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 7 346 - -
Lsi09g00318 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 325 IPR036291 -
Lsi09g00318 351 Pfam RmlD substrate binding domain 14 149 IPR029903 -
Lsi09g00318 351 Gene3D - 5 192 - -
Lsi09g00318 351 Gene3D - 200 351 - -
Lsi09g00318 351 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 7 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00318 K12451 UER1; 3,5-epimerase/4-reductase [EC:5.1.3.- 1.1.1.-] - csv:101205821 546.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01119 Lsi-Chr8:19835148 Lsi09g00318 Lsi-Chr9:3287975 3.28E-158 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g418 Blo02g01092 Blo03g00189 Bda06g00066 Bda08g00536 Bpe05g00624 Bpe07g00132 . . . . Cma02g01491 Cma15g01190 Car02g01249 Car15g01078 . . Cpe05g00300 . . . . . . . . . . . . . . . . . . . Csa05g00333 Chy09g01176 . . . . . . . . Bma12g00108 . Cmo02g01530 Cmo15g01253 . . . . . Cpe13g00184 Bhi12g00185 . . Lac11g2151 Hepe06g1594 . Lcy12g1711 Cla01g00310 Cam01g0322 Cec01g0313 Cco01g0330 Clacu01g0323 Cmu01g0308 Cre09g2202 Lsi09g00318 . . Cme09g01709
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003743 3 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 2 1 1 1 2 2 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00318 Lsi_Chr09 FPKM 0.0 1.398534 0.297462 0.965038 0.527554 1.094607 0.0 0.878329 0.344758 0.7147