Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00319 | ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCCGGTGGGTCTAGTGGTGCCTTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGAGTTCATAACGGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCGCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAACTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGCTCTTATGCTTCTTCTCAGCAGCATCACCAAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGTAATATCTCATGA | 456 | 47.81 | MQEPGLGMMTAAGGSSGALSGDVSVSGEGVHNGQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGNIS | 151 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3295926 | 3299979 | - | Lsi09G003190.1 | Lsi09g00319 | 669932 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00319 | 151 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 | 2 | 148 | - | - | |
Lsi09g00319 | 151 | Pfam | KNOX2 domain | 97 | 147 | IPR005541 | GO:0003677|GO:0005634 | |
Lsi09g00319 | 151 | SMART | KNOX1_2 | 33 | 77 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi09g00319 | 151 | Pfam | KNOX1 domain | 35 | 76 | IPR005540 | GO:0003677|GO:0005634 | |
Lsi09g00319 | 151 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 148 | - | - | |
Lsi09g00319 | 151 | SMART | KNOX2_2 | 93 | 148 | IPR005541 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi04g02098 | Lsi-Chr4:28156679 | Lsi09g00319 | Lsi-Chr9:3295926 | 5.08E-38 | dispersed | |
Lsi09g00319 | Lsi-Chr9:3295926 | Lsi11g00638 | Lsi-Chr11:6717313 | 2.27E-06 | dispersed | |
Lsi09g00319 | Lsi-Chr9:3295926 | Lsi08g01229 | Lsi-Chr8:20736876 | 3.59E-44 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00319 | - | - | csv:101206054 | 267.314 |