Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00319 ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCCGGTGGGTCTAGTGGTGCCTTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGAGTTCATAACGGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCGCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAACTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGCTCTTATGCTTCTTCTCAGCAGCATCACCAAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGTAATATCTCATGA 456 47.81 MQEPGLGMMTAAGGSSGALSGDVSVSGEGVHNGQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGNIS 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3295926 3299979 - Lsi09G003190.1 Lsi09g00319 669932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00319 151 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 148 - -
Lsi09g00319 151 Pfam KNOX2 domain 97 147 IPR005541 GO:0003677|GO:0005634
Lsi09g00319 151 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Lsi09g00319 151 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
Lsi09g00319 151 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 148 - -
Lsi09g00319 151 SMART KNOX2_2 93 148 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02098 Lsi-Chr4:28156679 Lsi09g00319 Lsi-Chr9:3295926 5.08E-38 dispersed
Lsi09g00319 Lsi-Chr9:3295926 Lsi11g00638 Lsi-Chr11:6717313 2.27E-06 dispersed
Lsi09g00319 Lsi-Chr9:3295926 Lsi08g01229 Lsi-Chr8:20736876 3.59E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00319 - - csv:101206054 267.314