Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00320 ATGGCGTCGTCTTCTTCCTCTGAAGAACCTCAAAATCAACCACCACAAGAACAGCAGCAACACCTGGTGAAGGAGAAGGAAAAGGAGTGCGTATACAAGACCAAACCCATTCAATTTCTCGGTCGCCCTACGCCTATTGTCCTCCAGAACGATAATGGCCCTTGCCCTCTCCTCGCCATATGTAATGTTCTCTTGTTGCGGAACAACTTAAATTTGGGTTCAGATGCTACTGAAGTATCACAGGAAAAATTGTTATCTCTGGTTGCTGAACGGTTGATTGATTCAAACAGTAATGTCGATAACAAAGATGTTGGTTTTGTTGAGAATCAACAACAGAACATTGCTGATGCCATTGATCTGCTGCCACGGCTAGCAACAGGGATAGATGTAAATATTAAGTTTAGGAGGATTGATGATTTTGAATTCACTCCAGAATGTGCAATTTTTGATTTGCTGGATATTCCTCTATATCATGGTTGGATAGTTGATCCTCAGGATCACGAAACTGCTAGTGCAATTGATTCCAAGTCCTACAATGCTATTATGGAGGAGCTTGTTGCTCTGGAAACGCAACACATGGAGGATCCGTGTAACAATCCTGAAGATGATTGTATTGATTTTGTAGCTGCAACAACAGCCACGCTTGGAGTCCCGTCTCCAAATCTTTCAAAAGTTCGATCTTTTGATGAATCACCTTGTTCAATCTCTGATGAGCAACAAATGAGAAAAGGAGATCTTGAAGAAGAGGCAGAGTTATTGAAAGCCTTGAAATTGTCTGAAACTGAAACACCAATCTTAATGGCTAATCATGGAGTGGTCAGTGCTGAGGGGGACACTAACCCTATTAAATTGGATGAGGAGCCATCTCCGGAGAAGGTTTCGGTCATAGATGCTGTGGAGAAGACCATAGTAAAAGACATCTGTGCTGCAGACAATAATCTTAACCAGCAGTCAGATTCATCCATTGTAGATTCTGGCAAGACCTCATTGAGCAAGAGTGATGAAGATGTGTCACCTTTTCCCAATGCCACAGAGCAAGCAAGCTCTTCTTCACAATTGAAGACTGATGCGGGAAAGCACCTTGATCAGACTGCTGAGTCTGAAGGGTATAAGATTTGCCCTGTGGAGAAGGACAATCATGAAACATTGATCGAGACTGTCACCAGTTCTGGAAGAGATGGTGCATTGGTGAATGAGAGTTCTGAGAGTAATTCGCAAATGAATGATAAATGCCCTTTTCCAGCTGCTTGTGAAACAGTTGATCATAGACCAGTTGATAAGGAAGACCCAATTGAACTATCAGGGCTATCTCCGACTGTTACTTGTACAGATTCAGAAGGTGGTAAAATCCAATGTATTGAGGCACCTGAAGGTTTGACTTCAACTGTTGGTAGTGAGCCCATATATGAAGGTGAGGAATGTATACTGGATCCAAGAAGTACAGTTCTTGAAGATCGAGAGCCCGTATATGAAGGTGAAGTTGTTCTTGCGGAACAGGGTTGTGGAAGCTCCATAAATTTCTGTAATACACAGTCAAAGGTTGAAATCAGTCCAAAACAAGGGGAGCTGATCAGGAATTTTTTAAAGAACAATGCAAGCCAGCTAACTTTTTATGGCCTTTTCTGCTTACAAGATGGTCTGAAAGAGCGTGAGCTTTGTGTTTTCTTCCGTAATAATCACTTCAGCACCATGTTTAAGCTTGATGGCCAGCTTTATCTCTTAGCTACAGACCAAGGTTACATTCATCAACCTGACTTGGTGTGGGAAAAGCTAAATGAGGTGCGTTGCTTCATTAGCAATATTGATAGTTTAATGTTTCCACAGCTTAACGCAGTAAATGGAGACACATTATTTATGACGAGTAATTTCAAAGAATTCAAAGTAGAAAGTCCTTCAAATGAGTCTTGGGATGAACATAATGCCATGACAAGCACAGCGGACTATCTTGCAAGCATTGATGCTACCAAACATACCGGAATGGATTTGAATTCTGACCTGCAATTAGCAATAGCCCTGCAACAGCAAGAGTTTGAACAACAACCACAGCGACAAAATGTGCAGCAGCCATCTTCAGGCGGCAGTTCAAGGCTGGTCGTGGGTCCTCAGGTGTCTAGAACAAGTGGCAAAACCCCGCCATCTTCTTCCTCAAGGACTGACACGAAATCGAAGGAAAAATGCAGTGTGATGTGA 2190 42.37 MASSSSSEEPQNQPPQEQQQHLVKEKEKECVYKTKPIQFLGRPTPIVLQNDNGPCPLLAICNVLLLRNNLNLGSDATEVSQEKLLSLVAERLIDSNSNVDNKDVGFVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDHETASAIDSKSYNAIMEELVALETQHMEDPCNNPEDDCIDFVAATTATLGVPSPNLSKVRSFDESPCSISDEQQMRKGDLEEEAELLKALKLSETETPILMANHGVVSAEGDTNPIKLDEEPSPEKVSVIDAVEKTIVKDICAADNNLNQQSDSSIVDSGKTSLSKSDEDVSPFPNATEQASSSSQLKTDAGKHLDQTAESEGYKICPVEKDNHETLIETVTSSGRDGALVNESSESNSQMNDKCPFPAACETVDHRPVDKEDPIELSGLSPTVTCTDSEGGKIQCIEAPEGLTSTVGSEPIYEGEECILDPRSTVLEDREPVYEGEVVLAEQGCGSSINFCNTQSKVEISPKQGELIRNFLKNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKLDGQLYLLATDQGYIHQPDLVWEKLNEVRCFISNIDSLMFPQLNAVNGDTLFMTSNFKEFKVESPSNESWDEHNAMTSTADYLASIDATKHTGMDLNSDLQLAIALQQQEFEQQPQRQNVQQPSSGGSSRLVVGPQVSRTSGKTPPSSSSRTDTKSKEKCSVM 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3310707 3321290 - Lsi09G003200.1 Lsi09g00320 669933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00320 729 Coils Coil 236 256 - -
Lsi09g00320 729 MobiDBLite consensus disorder prediction 1 19 - -
Lsi09g00320 729 MobiDBLite consensus disorder prediction 678 729 - -
Lsi09g00320 729 PANTHER NF-E2 INDUCIBLE PROTEIN 1 594 IPR007518 GO:0004843|GO:1990380
Lsi09g00320 729 PANTHER NF-E2 INDUCIBLE PROTEIN 603 729 IPR007518 GO:0004843|GO:1990380
Lsi09g00320 729 MobiDBLite consensus disorder prediction 1 25 - -
Lsi09g00320 729 MobiDBLite consensus disorder prediction 678 717 - -
Lsi09g00320 729 Pfam MINDY deubiquitinase 61 186 IPR033979 GO:0004843|GO:1990380
Lsi09g00320 729 MobiDBLite consensus disorder prediction 316 365 - -
Lsi09g00320 729 MobiDBLite consensus disorder prediction 316 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00320 K01309 MINDY1_2; ubiquitin carboxyl-terminal hydrolase MINDY-1/2 [EC:3.4.19.12] - csv:101220291 1172.53
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g421 . . . . . . Bma07g01626 . . . Cma02g01493 Cma15g01187 Car02g01253 Car15g01076 . . Cpe05g00297 . . . . . . . . . . . . . . . . Cone6ag0736 Cone9ag0741 . Csa05g00335 Chy09g01174 . . Blo19g00300 . Bda09g00065 Bpe08g01468 . . . . Cmo02g01532 Cmo15g01251 . . . . . Cpe13g00186 Bhi12g00329 . . Lac11g2154 Hepe06g1596 . Lcy12g1714 Cla01g00315 Cam01g0325 Cec01g0317 Cco01g0334 Clacu01g0327 Cmu01g0311 Cre09g2200 Lsi09g00320 . . Cme09g01707
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005681 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00320 Lsi_Chr09 FPKM 12.023947 14.380909 0.379781 0.360199 0.0 0.934161 0.564705 0.0 0.0 0.0