Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00321 ATGGAAGCAAAAATGGTGAGAGGAAAAACACAAATGAAGCGCATAGAAAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGCTTACTCAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAATTTTCCAATTGCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGTAACAACACAGCTATTGAAGATGTGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGAACTGAATCATCAAAAAAACAAGAAAGCAATCAGAGATCAGAATCATCAAACCATCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAAAGAAGAAGCAACAAAAATAATGGCTTCCTGTAG 666 37.69 MEAKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNNTAIEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSKIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVRTESSKKQESNQRSESSNHQEIMDVETELFIGPPERRSNKNNGFL 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3331222 3338153 + Lsi09G003210.1 Lsi09g00321 669934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00321 221 CDD MADS_MEF2_like 7 82 IPR033896 GO:0000977|GO:0045944
Lsi09g00321 221 SUPERFAMILY SRF-like 7 87 IPR036879 GO:0003677|GO:0046983
Lsi09g00321 221 Gene3D - 17 96 IPR036879 GO:0003677|GO:0046983
Lsi09g00321 221 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 ProSiteProfiles K-box domain profile. 92 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g00321 221 Pfam K-box region 94 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g00321 221 Coils Coil 126 146 - -
Lsi09g00321 221 ProSitePatterns MADS-box domain signature. 7 61 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 MobiDBLite consensus disorder prediction 178 198 - -
Lsi09g00321 221 MobiDBLite consensus disorder prediction 177 221 - -
Lsi09g00321 221 PANTHER MADS-BOX PROTEIN SOC1 5 211 - -
Lsi09g00321 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 PANTHER MADS BOX PROTEIN 5 211 - -
Lsi09g00321 221 Coils Coil 148 175 - -
Lsi09g00321 221 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00321 - - - csv:101220518 369.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01991 Lsi-Chr5:26983362 Lsi09g00321 Lsi-Chr9:3331222 1.89E-63 dispersed
Lsi09g00321 Lsi-Chr9:3331222 Lsi09g01914 Lsi-Chr9:27979417 1.11E-56 dispersed
Lsi05g01277 Lsi-Chr5:20508941 Lsi09g00321 Lsi-Chr9:3331222 4.58E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g422 . . . . . . . . Cmo06g01143 . Cma02g01494 Cma15g01186 Car02g01254 Car15g01075 . . Cpe05g00296 . . . . . . . . . . . . . . . . . . . Csa05g00336 Chy09g01173 . . Blo19g00299 . Bda09g00067 Bpe08g01465 . . . . Cmo02g01534 Cmo15g01250 Cma06g01116 . Car06g00953 . Cpe08g00501 Cpe13g00187 Bhi12g00330 . . . . . . Cla01g00316 Cam01g0326 Cec01g0318 Cco01g0335 Clacu01g0328 Cmu01g0312 Cre09g2199 Lsi09g00321 . . Cme09g01706
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00034 . 1 226 MADS-box Gene Family AT3G58780 59.5 7.5e-70 260.8
Lsi02g00845 CCT 28 222 MADS-box Gene Family AT3G58780 60.4 4.1e-60 228.4
Lsi10g01545 . 1 98 MADS-box Gene Family AT3G58780 80.6 4.4e-38 155.2
Lsi07g00959 . 1 221 MADS-box Gene Family AT1G26310 52.2 3.6e-56 215.3
Lsi08g00907 . 1 163 MADS-box Gene Family AT1G26310 57.4 5.3e-47 184.9
Lsi07g00957 . 1 167 MADS-box Gene Family AT1G26310 55.3 1.9e-41 166.4
Lsi09g01915 CCT 5 146 MADS-box Gene Family AT1G26310 56.4 5.8e-38 154.8
Lsi08g00034 . 1 227 MADS-box Gene Family AT4G09960 73.5 1.4e-86 316.2
Lsi02g00845 CCT 30 212 MADS-box Gene Family AT4G09960 57.3 3.6e-55 211.8
Lsi07g00957 . 1 169 MADS-box Gene Family AT3G61120 54.4 1.2e-40 163.7
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G11880 57.7 9.2e-56 213.8
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G11880 52.5 1.4e-43 173.3
Lsi05g01277 . 1 201 MADS-box Gene Family AT4G11880 51.0 1.6e-39 159.8
Lsi03g01188 . 1 208 MADS-box Gene Family AT5G13790 50.4 3.1e-45 179.1
Lsi04g02291 . 1 207 MADS-box Gene Family AT2G22630 58.4 6.3e-52 201.1
Lsi01g00825 . 3 165 MADS-box Gene Family AT2G22630 58.3 5.4e-43 171.4
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G22950 61.4 4.6e-60 228.0
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G22950 50.7 8.5e-46 180.6
Lsi07g00957 . 1 254 MADS-box Gene Family AT5G15800 72.7 3.0e-98 355.1
Lsi07g00959 . 1 161 MADS-box Gene Family AT5G15800 52.0 2.3e-37 152.9
Lsi05g01991 CCT 1 159 MADS-box Gene Family AT2G45660 69.8 1.2e-52 203.0
Lsi09g00321 . 5 163 MADS-box Gene Family AT2G45660 65.4 4.6e-49 191.0
Lsi09g01914 . 1 199 MADS-box Gene Family AT2G45660 55.3 2.1e-46 182.2
Lsi05g01277 . 1 183 MADS-box Gene Family AT2G45660 51.4 1.2e-38 156.4
Lsi04g02291 . 1 218 MADS-box Gene Family AT4G37940 62.1 1.3e-59 226.5
Lsi01g00825 . 3 128 MADS-box Gene Family AT4G37940 69.0 1.1e-42 170.2
Lsi08g01026 . 38 183 MADS-box Gene Family AT2G22540 63.7 2.3e-44 176.0
Lsi08g01026 . 38 181 MADS-box Gene Family AT4G24540 60.3 9.8e-42 167.2
Lsi07g00957 . 1 175 MADS-box Gene Family AT2G03710 67.0 1.3e-58 223.0
Lsi02g00138 . 1 197 MADS-box Gene Family AT2G03710 54.3 7.0e-49 190.7
Lsi07g00957 . 1 177 MADS-box Gene Family AT3G02310 84.3 4.5e-78 287.7
Lsi02g00138 . 1 196 MADS-box Gene Family AT3G02310 58.2 7.8e-54 207.2
Lsi09g01915 CCT 5 142 MADS-box Gene Family AT3G02310 58.6 6.4e-40 161.0
Lsi07g00959 . 1 158 MADS-box Gene Family AT3G02310 53.8 1.1e-36 150.2
Lsi05g01991 CCT 1 144 MADS-box Gene Family AT5G62165 62.5 6.8e-42 167.2
Lsi09g00321 . 5 158 MADS-box Gene Family AT5G62165 58.4 8.9e-42 166.8
Lsi05g01277 . 1 172 MADS-box Gene Family AT5G62165 54.1 1.5e-41 166.0
Lsi04g02291 . 1 141 MADS-box Gene Family AT2G14210 74.6 1.7e-52 203.0
Lsi01g00825 . 3 128 MADS-box Gene Family AT2G14210 63.8 1.2e-37 153.7
Lsi08g00034 . 1 183 MADS-box Gene Family AT2G42830 70.8 2.0e-67 252.7
Lsi02g00845 CCT 30 186 MADS-box Gene Family AT2G42830 72.1 9.0e-60 227.3
Lsi10g01545 . 1 98 MADS-box Gene Family AT2G42830 78.6 1.6e-37 153.3
Lsi09g01915 CCT 5 260 MADS-box Gene Family AT2G45650 54.6 3.9e-71 265.0
Lsi05g01280 . 1 181 MADS-box Gene Family AT2G45650 53.6 5.0e-42 168.3
Lsi08g00034 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.4e-38 155.6
Lsi01g00165 . 506 622 MADS-box Gene Family AT1G29960 54.7 9.6e-39 156.4
Lsi09g00321 . 5 151 MADS-box Gene Family AT5G51870 53.7 6.4e-37 151.0
Lsi07g00959 . 1 189 MADS-box Gene Family AT3G30260 55.1 5.3e-44 174.9
Lsi07g00957 . 1 253 MADS-box Gene Family AT1G24260 58.0 1.0e-68 256.9
Lsi09g01728 . 1 180 MADS-box Gene Family AT1G24260 63.8 1.0e-52 203.8
Lsi07g00959 . 1 161 MADS-box Gene Family AT1G24260 52.1 1.4e-38 156.8
Lsi04g01716 . 1 243 MADS-box Gene Family AT3G54340 57.6 4.9e-68 254.6
Lsi04g01838 . 23 128 MADS-box Gene Family AT5G20240 74.5 3.3e-41 164.9
Lsi04g01838 . 23 128 MADS-box Gene Family AT5G20240 74.5 3.3e-41 164.9
Lsi04g01716 . 1 243 MADS-box Gene Family AT3G54340 57.6 4.9e-68 254.6
Lsi08g00034 . 1 226 MADS-box Gene Family AT3G58780 59.5 7.5e-70 260.8
Lsi02g00845 CCT 28 222 MADS-box Gene Family AT3G58780 60.4 4.1e-60 228.4
Lsi10g01545 . 1 98 MADS-box Gene Family AT3G58780 80.6 4.4e-38 155.2
Lsi07g00957 . 1 254 MADS-box Gene Family AT5G15800 72.7 3.0e-98 355.1
Lsi07g00959 . 1 161 MADS-box Gene Family AT5G15800 52.0 2.3e-37 152.9
Lsi07g00957 . 1 175 MADS-box Gene Family AT2G03710 67.0 1.3e-58 223.0
Lsi02g00138 . 1 197 MADS-box Gene Family AT2G03710 54.3 7.0e-49 190.7
Lsi07g00957 . 1 177 MADS-box Gene Family AT3G02310 84.3 4.5e-78 287.7
Lsi02g00138 . 1 196 MADS-box Gene Family AT3G02310 58.2 7.8e-54 207.2
Lsi09g01915 CCT 5 142 MADS-box Gene Family AT3G02310 58.6 6.4e-40 161.0
Lsi07g00959 . 1 158 MADS-box Gene Family AT3G02310 53.8 1.1e-36 150.2
Lsi08g00034 . 1 183 MADS-box Gene Family AT2G42830 70.8 2.0e-67 252.7
Lsi02g00845 CCT 30 186 MADS-box Gene Family AT2G42830 72.1 9.0e-60 227.3
Lsi10g01545 . 1 98 MADS-box Gene Family AT2G42830 78.6 1.6e-37 153.3
Lsi09g01915 CCT 5 260 MADS-box Gene Family AT2G45650 54.6 3.9e-71 265.0
Lsi05g01280 . 1 181 MADS-box Gene Family AT2G45650 53.6 5.0e-42 168.3
Lsi08g00034 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.4e-38 155.6
Lsi07g00957 . 1 253 MADS-box Gene Family AT1G24260 58.0 1.0e-68 256.9
Lsi09g01728 . 1 180 MADS-box Gene Family AT1G24260 63.8 1.0e-52 203.8
Lsi07g00959 . 1 161 MADS-box Gene Family AT1G24260 52.1 1.4e-38 156.8
Lsi07g00959 . 1 221 MADS-box Gene Family AT1G26310 52.2 3.6e-56 215.3
Lsi08g00907 . 1 163 MADS-box Gene Family AT1G26310 57.4 5.3e-47 184.9
Lsi07g00957 . 1 167 MADS-box Gene Family AT1G26310 55.3 1.9e-41 166.4
Lsi09g01915 CCT 5 146 MADS-box Gene Family AT1G26310 56.4 5.8e-38 154.8
Lsi08g00034 . 1 227 MADS-box Gene Family AT4G09960 73.5 1.4e-86 316.2
Lsi02g00845 CCT 30 212 MADS-box Gene Family AT4G09960 57.3 3.6e-55 211.8
Lsi07g00957 . 1 169 MADS-box Gene Family AT3G61120 54.4 1.2e-40 163.7
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G11880 57.7 9.2e-56 213.8
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G11880 52.5 1.4e-43 173.3
Lsi05g01277 . 1 201 MADS-box Gene Family AT4G11880 51.0 1.6e-39 159.8
Lsi03g01188 . 1 208 MADS-box Gene Family AT5G13790 50.4 3.1e-45 179.1
Lsi04g02291 . 1 207 MADS-box Gene Family AT2G22630 58.4 6.3e-52 201.1
Lsi01g00825 . 3 165 MADS-box Gene Family AT2G22630 58.3 5.4e-43 171.4
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G22950 61.4 4.6e-60 228.0
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G22950 50.7 8.5e-46 180.6
Lsi05g01991 CCT 1 159 MADS-box Gene Family AT2G45660 69.8 1.2e-52 203.0
Lsi09g00321 . 5 163 MADS-box Gene Family AT2G45660 65.4 4.6e-49 191.0
Lsi09g01914 . 1 199 MADS-box Gene Family AT2G45660 55.3 2.1e-46 182.2
Lsi05g01277 . 1 183 MADS-box Gene Family AT2G45660 51.4 1.2e-38 156.4
Lsi04g02291 . 1 218 MADS-box Gene Family AT4G37940 62.1 1.3e-59 226.5
Lsi01g00825 . 3 128 MADS-box Gene Family AT4G37940 69.0 1.1e-42 170.2
Lsi08g01026 . 38 183 MADS-box Gene Family AT2G22540 63.7 2.3e-44 176.0
Lsi08g01026 . 38 181 MADS-box Gene Family AT4G24540 60.3 9.8e-42 167.2
Lsi05g01991 CCT 1 144 MADS-box Gene Family AT5G62165 62.5 6.8e-42 167.2
Lsi09g00321 . 5 158 MADS-box Gene Family AT5G62165 58.4 8.9e-42 166.8
Lsi05g01277 . 1 172 MADS-box Gene Family AT5G62165 54.1 1.5e-41 166.0
Lsi04g02291 . 1 141 MADS-box Gene Family AT2G14210 74.6 1.7e-52 203.0
Lsi01g00825 . 3 128 MADS-box Gene Family AT2G14210 63.8 1.2e-37 153.7
Lsi01g00165 . 506 622 MADS-box Gene Family AT1G29960 54.7 9.6e-39 156.4
Lsi09g00321 . 5 151 MADS-box Gene Family AT5G51870 53.7 6.4e-37 151.0
Lsi07g00959 . 1 189 MADS-box Gene Family AT3G30260 55.1 5.3e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005682 1 2 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25869 PF01486 K-box 9.30E-22 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00321 Lsi_Chr09 FPKM 12.577645 13.9929 13.668777 12.743452 2.562147 1.202069 2.587641 2.361335 1.865472 2.74413