Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00321 ATGGAAGCAAAAATGGTGAGAGGAAAAACACAAATGAAGCGCATAGAAAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGCTTACTCAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAATTTTCCAATTGCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGTAACAACACAGCTATTGAAGATGTGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGAACTGAATCATCAAAAAAACAAGAAAGCAATCAGAGATCAGAATCATCAAACCATCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAAAGAAGAAGCAACAAAAATAATGGCTTCCTGTAG 666 37.69 MEAKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNNTAIEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSKIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVRTESSKKQESNQRSESSNHQEIMDVETELFIGPPERRSNKNNGFL 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3331222 3338153 + Lsi09G003210.1 Lsi09g00321 669934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00321 221 CDD MADS_MEF2_like 7 82 IPR033896 GO:0000977|GO:0045944
Lsi09g00321 221 SUPERFAMILY SRF-like 7 87 IPR036879 GO:0003677|GO:0046983
Lsi09g00321 221 Gene3D - 17 96 IPR036879 GO:0003677|GO:0046983
Lsi09g00321 221 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 ProSiteProfiles K-box domain profile. 92 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g00321 221 Pfam K-box region 94 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g00321 221 Coils Coil 126 146 - -
Lsi09g00321 221 ProSitePatterns MADS-box domain signature. 7 61 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 MobiDBLite consensus disorder prediction 178 198 - -
Lsi09g00321 221 MobiDBLite consensus disorder prediction 177 221 - -
Lsi09g00321 221 PANTHER MADS-BOX PROTEIN SOC1 5 211 - -
Lsi09g00321 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 61 IPR002100 GO:0003677|GO:0046983
Lsi09g00321 221 PANTHER MADS BOX PROTEIN 5 211 - -
Lsi09g00321 221 Coils Coil 148 175 - -
Lsi09g00321 221 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01991 Lsi-Chr5:26983362 Lsi09g00321 Lsi-Chr9:3331222 1.89E-63 dispersed
Lsi09g00321 Lsi-Chr9:3331222 Lsi09g01914 Lsi-Chr9:27979417 1.11E-56 dispersed
Lsi05g01277 Lsi-Chr5:20508941 Lsi09g00321 Lsi-Chr9:3331222 4.58E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25869 PF01486 K-box 9.30E-22 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00321 - - csv:101220518 369.007