Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00323 ATGGAAGATCAAGCCCTTCCTCAGCGGACCCATCAATCTTCTTCCACGCCTTCACCTTCTTCTTCTTCTCCGTCATCTTCTTTACAGCTCAATTTGCCGCCTTCAATGTCTCGGGCTTCTCACTCACTTGAAACCCTAACCCCATCTCGCCAAATCGACCGTATGATCAATATCAACCATCATTTGTCGCCATCTAGAGCTATCTACTCTGATAGATTCATACCCAGTAGATCTGGTTCCAATTTTGCCCTATTTGATATCTCCCCTGTTTCCAATTCCCACTCTGATGGTCGCGAGGATACTTCTACTGCCTACGCTACGCTTCTTCGGACGGCTTTGTTTGGCCCTGATGCTGGAGTAGTCCCTCCTGCTACTCCTGAGAAGAGAAGCTCCCCAATGTGCCTTCCTAATCATAATATTTTTCGTTATAAGACCGAGACTAGGAGGTCAATGCATTCGCTTTCGCCTTTTGGGTTTGATGATGCGGCTCCTGGGCTTAATCCAAGTCCGGTTAAGACTCCAAGGAAGGTTCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTCTGCAAGATGATTTTTATCTCAATCTTGTGGATTGGTCTTCGCATAATGTGCTGGCTGTGGGGTTGGGTAATTGTGTTTATCTCTGGAATGCTTGTAGTAGTAAGGTCACCAAGTTATGTGATTTGGGAATCGATGACAGTGTATGTTCAGTGGGCTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAATGGGAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACCATGGAGGGCCATCGGTTACGAGTTGGGGCCTTAGCTTGGAGCTCATCTCTTTTATCGTCTGGTAGCCGGGACAAAAGTATTCTTCAAAGAGATATTCGGGCTCAGGATGATTTCGTGACTAAATTATCTGGCCATAAATCAGAGGTTTGTGGATTGAAATGGTCATACGATAATCGTGAATTAGCATCAGGAGGAAATGATAATAGATTATTTGTTTGGAATCAACATTCAACCCAACCAGTACTTAAATTTTATGAGCACACCGCTGCTGTAAAAGCTATAGCGTGGTCTCCTCATCTTCATGGACTACTTGCATCAGGGGGTGGAACCGCAGATCGATGTATTCGTTTTTGGAACACAACTACCAATACACATTTGAGCTGCATGGACACTGGAAGTCAGGTGTGCAATCTGGCATGGTCTAAGAATGTTAATGAACTTGTTAGTACCCATGGGTTCTCCCAAAACCAAATAATAGTCTGGAGATATCCAACTATGTCTAAGTTGGCAACATTGACTGGCCATACTTTCAGAGTTCTTTATCTGGCCATATCTCCTGATGGTCAGACCATTGTAACAGGTGCTGGTGATGAAACGCTTAGATTTTGGAATGTCTTCCCTTCACCTAAATCGCAGATCAAGATACGTTATAGTGAGACAAAATCAATAGCTACTCTTGAGCTGTCTTGA 1503 44.71 MEDQALPQRTHQSSSTPSPSSSSPSSSLQLNLPPSMSRASHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDISPVSNSHSDGREDTSTAYATLLRTALFGPDAGVVPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDDAAPGLNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQIKIRYSETKSIATLELS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3356813 3360385 - Lsi09G003230.1 Lsi09g00323 669936

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00323 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 443 476 IPR001680 GO:0005515
Lsi09g00323 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Lsi09g00323 500 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 25 485 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lsi09g00323 500 Pfam Anaphase-promoting complex subunit 4 WD40 domain 232 286 IPR024977 -
Lsi09g00323 500 Gene3D - 171 480 IPR015943 GO:0005515
Lsi09g00323 500 PANTHER PROTEIN FIZZY-RELATED 1 25 485 - -
Lsi09g00323 500 MobiDBLite consensus disorder prediction 1 43 - -
Lsi09g00323 500 Pfam WD domain, G-beta repeat 310 345 IPR001680 GO:0005515
Lsi09g00323 500 Pfam WD domain, G-beta repeat 439 475 IPR001680 GO:0005515
Lsi09g00323 500 Pfam WD domain, G-beta repeat 350 390 IPR001680 GO:0005515
Lsi09g00323 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 345 - -
Lsi09g00323 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 443 476 - -
Lsi09g00323 500 ProSitePatterns Trp-Asp (WD) repeats signature. 462 476 IPR019775 -
Lsi09g00323 500 SMART WD40_4 392 433 IPR001680 GO:0005515
Lsi09g00323 500 SMART WD40_4 348 390 IPR001680 GO:0005515
Lsi09g00323 500 SMART WD40_4 178 219 IPR001680 GO:0005515
Lsi09g00323 500 SMART WD40_4 265 302 IPR001680 GO:0005515
Lsi09g00323 500 SMART WD40_4 222 262 IPR001680 GO:0005515
Lsi09g00323 500 SMART WD40_4 436 475 IPR001680 GO:0005515
Lsi09g00323 500 SMART WD40_4 306 345 IPR001680 GO:0005515
Lsi09g00323 500 MobiDBLite consensus disorder prediction 7 43 - -
Lsi09g00323 500 SUPERFAMILY WD40 repeat-like 188 476 IPR036322 GO:0005515
Lsi09g00323 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00323 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - csv:101220762 947.577
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01623 Lsi-Chr2:22136159 Lsi09g00323 Lsi-Chr9:3356813 0 dispersed
Lsi09g00095 Lsi-Chr9:832911 Lsi09g00323 Lsi-Chr9:3356813 3.19E-111 dispersed
Lsi09g00323 Lsi-Chr9:3356813 Lsi08g00743 Lsi-Chr8:15768189 2.84E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00323 Lsi_Chr09 FPKM 4.930818 7.753807 55.406673 58.922573 2.737307 2.357844 2.823723 13.219973 14.259476 15.832496