Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00326 ATGGCTTCTTCTTCAGGCTTCAATATCTTCTTGGTGGCATTGGTTTTGGCCATTTTCAACAGATCAACGCTCGCTGTGTTCCAACCAAGCTCTTGGAAACTCGCTCACGCCACCTTTTATGGCGATGAAACTGCCTCTGAAACCATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACGAACGGGTATGGAACTGATACAGCGGCGTTGAGCTCGACACTGTTCAACAATGGCTACGCTTGCGGGACTTGCTTTCAAATCAAATGTGTGCAGTCAAAGGCATGCTATGCGAACGTTCCGTTCACCACCGTGACGGCGACCAACCTCTGCCCGCCAAATTGGTCGCAGGACTCGAACGCCGGCGGCTGGTGCAACCCACCAAGAGTTCATTTTGACATGGCCAAGCCTGCCTTCATGAAGATCGCCTGGTGGAAGGCCGGCATTGTCCCCGTTCAGTACCGCAGGAGGAGGAGGAGATGTGTATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGTCATAA 534 51.12 MASSSGFNIFLVALVLAIFNRSTLAVFQPSSWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTAALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRRRRRCVFNGSERKQNRMDNNES 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3404485 3407388 - Lsi09G003260.1 Lsi09g00326 669939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00326 177 Pfam Lytic transglycolase 67 153 IPR009009 -
Lsi09g00326 177 PANTHER EXPANSIN 22 155 - -
Lsi09g00326 177 PANTHER EXPANSIN-A15 22 155 IPR002963 GO:0009664
Lsi09g00326 177 SMART dpbb_1 67 153 IPR007112 -
Lsi09g00326 177 SUPERFAMILY Barwin-like endoglucanases 31 155 IPR036908 -
Lsi09g00326 177 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 155 IPR007112 -
Lsi09g00326 177 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Lsi09g00326 177 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Lsi09g00326 177 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Lsi09g00326 177 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Lsi09g00326 177 Gene3D - 17 157 IPR036908 -
Lsi09g00326 177 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Lsi09g00326 177 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Lsi09g00326 177 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Lsi09g00326 177 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi07g01373 Lsi09g00326 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00326 Lsi-Chr9:3404485 Lsi07g01373 Lsi-Chr7:19983160 8.52E-64 dispersed
Lsi09g00326 Lsi-Chr9:3404485 Lsi02g01625 Lsi-Chr2:22146003 1.99E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00326 - - csv:101221231 310.071