Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00341 ATGGTGGTTCTTCCTTTCCTCTGTATTTTTTTCTCGCTGAACATTGAGAGCAATGTTGCCGCAGAAATTGAGCTTCCAACTACTCCCCACCAAAGCAAACTTCAAACCTATATTGTCCATGTGGAGCAGCCCAAGATCAGACTTGTAGGTGAATCCTCAAATGATCATATTGAAAGTTGGTACATGTCATTTCTACCGGCAATGACGGAGACTGTGGCCGAGCCGCCGCGTTTGCTTTATGCGTATCGAAATGTAATGAGTGGCTTCTCTGCAAGACTTACAAAAGAACAAGTAAAATCTATGGAGAAGAAGGATGGTTTCATATCAGCAATGCCTGAAACTATAATGAATTTGCACACAACTCATACCCCTGACTATTTGGGGTTGAACCAACAATTTGGATTATGGAAAAATTCAAACTTTGGAAAAGGAGTGATTATAGGAGTGTTGGATACTGGAATTCATCCGAGTCATCCTTCGTTTAGCGACGAAGGAATGTCGCCGCCACCCGCAAAATGGAAAGGAAGATGCGAGTTTAATATCTCTGTATGCAACAACAAATTGATTGGTGCTAGAAATTTCAACCGTGGAAATAGTTTTTTGATGGGGGATCAGTCGCCTTCTGATGAAAAAGGCCATGGCACACACACAGCAAGCACGGCTGCTGGTGCCTTTGTGGAAGGTGCTAAAGCTTTGGGAAATGCTAGAGGCAAGGCGGCTGGCATGGCACCTTTAGCTCACCGTGCAATTTATAAAGTTTGTTCCGTTAAAAGTTGTCCGAGTAGTGACGTTCTTGCAGGGATAGATGCTGCTATCGACGATGGGGTCGACGTGCTATCGATCTCACTCGGGTCTCGCTCGGTTCCCTTTTTCAAGGACAACATAGCTGTAGCCACATTTGGAGCAATTCAAAAGGGGGTTTTTGTTAGTTGTTCTGCAGGAAATTCAGGGCCTTTTAATAGTACATTATCTAATGAAGCGCCATGGATTTTAACAGTTGAAGCAAGCACTATTAATAGAAGGATTGTAGCAGTTGCCAAGCTTGTAAATGAGAAAACAAAAACTCTGCATTTTGTGGTGAAGGTTCACTTGAAAATATGGATGAAAGGAGGAGTTGGGAGAGTTGCAAAAGGATTAGTAGTGAAAAATGCTGGTGGTGCAGCAATGATTCTTATAAATCAACAACAAGATGGATTTAGTACTCTGTCTGAAGCTCATGTTCTTCCAGCAACACATGTCAGCTATGAAGCTGGACTCTTGATCAAATCCTACATAAATTCATCACAAAATCCAACTGCATCAATATCATTTAAAGGAACCATAATTGGAGATAATGATGACTTTTCAGCTCCTGCCATGGCTTCTTTTTCTTCTCGAGGGCCCTGCCTTCCTAGCCCTGGGATCTTAAAACCTGACATAACAGGCCCTGGAGTCAACATTCTCGCAGCTTGGCCATTCCCATTAGACAACAACACAAACACAAAATCAACATTTAACGTTATGTCAGGAACATCAATGTCTTGCCTCATTTAA 1533 42.34 MVVLPFLCIFFSLNIESNVAAEIELPTTPHQSKLQTYIVHVEQPKIRLVGESSNDHIESWYMSFLPAMTETVAEPPRLLYAYRNVMSGFSARLTKEQVKSMEKKDGFISAMPETIMNLHTTHTPDYLGLNQQFGLWKNSNFGKGVIIGVLDTGIHPSHPSFSDEGMSPPPAKWKGRCEFNISVCNNKLIGARNFNRGNSFLMGDQSPSDEKGHGTHTASTAAGAFVEGAKALGNARGKAAGMAPLAHRAIYKVCSVKSCPSSDVLAGIDAAIDDGVDVLSISLGSRSVPFFKDNIAVATFGAIQKGVFVSCSAGNSGPFNSTLSNEAPWILTVEASTINRRIVAVAKLVNEKTKTLHFVVKVHLKIWMKGGVGRVAKGLVVKNAGGAAMILINQQQDGFSTLSEAHVLPATHVSYEAGLLIKSYINSSQNPTASISFKGTIIGDNDDFSAPAMASFSSRGPCLPSPGILKPDITGPGVNILAAWPFPLDNNTNTKSTFNVMSGTSMSCLI 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3541767 3543381 + Lsi09G003410.1 Lsi09g00341 669954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00341 510 Pfam PA domain 373 419 IPR003137 -
Lsi09g00341 510 Gene3D - 339 353 - -
Lsi09g00341 510 SUPERFAMILY Subtilisin-like 118 508 IPR036852 GO:0004252|GO:0006508
Lsi09g00341 510 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Lsi09g00341 510 PRINTS Subtilisin serine protease family (S8) signature 502 510 IPR015500 -
Lsi09g00341 510 PRINTS Subtilisin serine protease family (S8) signature 209 222 IPR015500 -
Lsi09g00341 510 Gene3D Peptidase S8/S53 domain 144 338 IPR036852 GO:0004252|GO:0006508
Lsi09g00341 510 CDD PA_subtilisin_like 370 435 - -
Lsi09g00341 510 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 147 158 IPR023827 -
Lsi09g00341 510 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 353 IPR045051 -
Lsi09g00341 510 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 369 508 IPR045051 -
Lsi09g00341 510 Pfam Peptidase inhibitor I9 36 119 IPR010259 -
Lsi09g00341 510 CDD Peptidases_S8_3 118 508 IPR034197 -
Lsi09g00341 510 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 31 353 - -
Lsi09g00341 510 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 369 508 - -
Lsi09g00341 510 ProSiteProfiles Serine proteases, subtilase domain profile. 126 510 - -
Lsi09g00341 510 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 119 IPR037045 -
Lsi09g00341 510 Pfam Subtilase family 142 508 IPR000209 GO:0006508|GO:0008236
Lsi09g00341 510 Gene3D Peptidase S8/S53 domain 448 507 IPR036852 GO:0004252|GO:0006508
Lsi09g00341 510 Gene3D - 370 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00341 - - - cmo:103483066 828.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00341 Lsi-Chr9:3541767 Lsi09g00344 Lsi-Chr9:3558100 0 dispersed
Lsi09g00337 Lsi-Chr9:3521105 Lsi09g00341 Lsi-Chr9:3541767 0 proximal
Lsi09g00341 Lsi-Chr9:3541767 Lsi09g00343 Lsi-Chr9:3549223 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00696 . . . . . . . . . . . . . . . . . . Cla01g00326 Cam01g0337 Cec01g0331 Cco01g0344 Clacu01g0341 Cmu01g0321 Cre09g2189 Lsi09g00341 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00341 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0