Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00343 ATGGTTGTTCTTCCTTTCTTTTGTATCCTTCTCTTACTTAACTTTCATGGCAATGTTGCCATGAAAACGAAGCTTTCAGTTACTTCCAACACAATCAAACTACAAACCTACATTGTCCATGTGAAGCAGCCAGATCAGCTTGGGATTTTGGGCGAAACCATTGATCTAAAAAGTTGGTATACATCATTCTTACCTGAAACGATCGAGACGTCGAACGAACAATCGCGGTTACTTTATTCATATCAAAATGTTATAAGTGGTTTTTCTGCAAGACTTACAGAAGAACAAGTTAAAGCCATGGAAGAGAAGTATGGTTTTATCTCAGCCAGGCCGGAAACCATATTGAATTTGCAGACAACTTATACTCCTGAGTATTTGGGGTTGAACCAACAATTTGGATTGTGGAAAGATTCGAACTTTGGAAAGGGAGTGATCATAGGAGTGTTGGATACTGGAATTAATCCTGATCATCCTTCGTTTAATGATGATGTAATGCCACAGCCACCAGCTAAATGGAAAGGAAGATGTGAGTTTGGTGCTTCCATTTGTAATAACAAGTTGATTGGTGCAAGAACTTTCAATCGTGCTAATACTATTTTGATGGGGGAATCACCTATTGATGAAAATGGACATGGCACTCACACAGCAAGCACGGCTGCAGGCACTTTCGTTGAAGGTGCTGAAGCTTTGGGAAATGCAAGAGGCAAGGCAGTTGGAATTGCACCTTTAGCTCATCTTGCAATGTATAAAGTTTGTTCTTCAAAAGGCTGCTCGAGCAGCGATATACTTGCAGCGTTAGACGCTGCAATTGGCGATGGTGTCGACATTCTCTCGCTCTCCCTCGGTGCCCCTTCGACTCCGTTTTTCAACGACAACATTGCCATAGGCGCATTTGCAGCCATTAAAAAGGGAATTTTTGTGAGTTGTTCAGCTGGGAATTCAGGCCCTTCCAAAAGCACATTAGCCAATGAAGCACCATGGATTCTAACAGTTGGAGCAAGCACTATTGATCGAACAATTGTTGCATTAGCAAAGCTTGGAAATGGTGAAGTCCATTTTGGTGAATCTTTGTTCCAGCCAAGAGATTTCCTATCAACATTCTTACCACTTGTATACGCTGGCAGCAGTGAAATCAAAGGGTCTGAATTTTGTGTTGAAGGCTCACTTACAAAACTAAACGTGAAAGGAAAAGTTGTGGTATGTGAAAGAGGAGGAGGAATAAGCGGAAAAGCAAAAGGGTTGGTAGTGAAAAATGCTGGTGGAGCTGTCATGATTCTTATAAACCAAAAACCAGATGGGTTCAGTACTTTAGCAGAAGCTCATATTCTTCCAGCAACCCATGTAAGCTATGAAGCTGGACTCAAAATCAAAGCATATATAAGTTCATCACACAATCCAATAGCATCAATTTCATTTAGAGGAACTATGATTGGAAATAGAGCCACCACTTTCTCCCCTGCTGTGGCTTCTTTTTCTTCTAGAGGCCCCTGCCTCCGTAGCCCTGGGATCTTGAAACCTGACATAACAGGCCCTGGTGTCAACATTCTTGCAGCTTGGCCATTCCCATTAGATAACAACACAAACACAAAATCAACATTTAATATTATATCAGGAACATCAATGTCTTGTCCCCATTTAAGTGGAATTGCAGCTTTGATCAAAAGTGTTCATCCTAATTGGTCCCCTGCTGCCATAAAATCTGCCATTATGACCTCTGCAGATGTAAGAAACCTTCAAGGGAAACCAATCGTGGATCAAGATTTGAAACCGGCGAACTTTTTTGCTATGGGGTCCGGCCATGTCAATCCATCAAAAGCAGCTGACCCAGGATTGGTTTACGACATTCAGCCTGATGATTACGTTCCTTATCTTTGCGGTTTGTACAGAGATGCCCAAGTCTCGATTATTGTTGGTAGACAAATAACATGTTCGACGGTATCAAGAATTCGAGAAGGGGATTTGAATTATCCTTCATTTTCTGTGACGTTGGGAGCCTCACAGACGTTTAATAGAACAGTGACAAATGTGGGTGATGCAAACTCAGTTTATTCCGTCATTGTTGAGGCGCCGGTTGGAGCTTCAGTGAGAGTTACACCAAGCAATTTGAAATTCTCGAGGGTGAATGAGCAAATGACATATTTGGTAACTTTCAGTCGGGATGATTTAGTTAGAACGACGAAAACTCTTTACGTCGATGTTGAGCCATTTAGCGTTGGCAGTTCGTTGACGACGGAGGTATGCCAACGGTTTCTTTTGACGGTTCCCGCATCGGCATATGCTCTTTGA 2286 42.08 MVVLPFFCILLLLNFHGNVAMKTKLSVTSNTIKLQTYIVHVKQPDQLGILGETIDLKSWYTSFLPETIETSNEQSRLLYSYQNVISGFSARLTEEQVKAMEEKYGFISARPETILNLQTTYTPEYLGLNQQFGLWKDSNFGKGVIIGVLDTGINPDHPSFNDDVMPQPPAKWKGRCEFGASICNNKLIGARTFNRANTILMGESPIDENGHGTHTASTAAGTFVEGAEALGNARGKAVGIAPLAHLAMYKVCSSKGCSSSDILAALDAAIGDGVDILSLSLGAPSTPFFNDNIAIGAFAAIKKGIFVSCSAGNSGPSKSTLANEAPWILTVGASTIDRTIVALAKLGNGEVHFGESLFQPRDFLSTFLPLVYAGSSEIKGSEFCVEGSLTKLNVKGKVVVCERGGGISGKAKGLVVKNAGGAVMILINQKPDGFSTLAEAHILPATHVSYEAGLKIKAYISSSHNPIASISFRGTMIGNRATTFSPAVASFSSRGPCLRSPGILKPDITGPGVNILAAWPFPLDNNTNTKSTFNIISGTSMSCPHLSGIAALIKSVHPNWSPAAIKSAIMTSADVRNLQGKPIVDQDLKPANFFAMGSGHVNPSKAADPGLVYDIQPDDYVPYLCGLYRDAQVSIIVGRQITCSTVSRIREGDLNYPSFSVTLGASQTFNRTVTNVGDANSVYSVIVEAPVGASVRVTPSNLKFSRVNEQMTYLVTFSRDDLVRTTKTLYVDVEPFSVGSSLTTEVCQRFLLTVPASAYAL 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3549223 3556534 + Lsi09G003430.1 Lsi09g00343 669956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00343 761 Pfam PA domain 369 456 IPR003137 -
Lsi09g00343 761 PRINTS Subtilisin serine protease family (S8) signature 207 220 IPR015500 -
Lsi09g00343 761 PRINTS Subtilisin serine protease family (S8) signature 141 160 IPR015500 -
Lsi09g00343 761 PRINTS Subtilisin serine protease family (S8) signature 537 553 IPR015500 -
Lsi09g00343 761 Pfam Subtilase family 141 576 IPR000209 GO:0006508|GO:0008236
Lsi09g00343 761 Gene3D Peptidase S8/S53 domain 143 620 IPR036852 GO:0004252|GO:0006508
Lsi09g00343 761 Gene3D - 337 477 - -
Lsi09g00343 761 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 118 IPR037045 -
Lsi09g00343 761 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 146 157 IPR023827 -
Lsi09g00343 761 CDD Peptidases_S8_3 115 574 IPR034197 -
Lsi09g00343 761 ProSiteProfiles Serine proteases, subtilase domain profile. 120 607 - -
Lsi09g00343 761 Pfam Peptidase inhibitor I9 36 116 IPR010259 -
Lsi09g00343 761 SUPERFAMILY Subtilisin-like 117 611 IPR036852 GO:0004252|GO:0006508
Lsi09g00343 761 CDD PA_subtilisin_like 345 470 - -
Lsi09g00343 761 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 31 725 - -
Lsi09g00343 761 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 725 IPR045051 -
Lsi09g00343 761 Pfam Fibronectin type-III domain 653 721 IPR041469 -
Lsi09g00343 761 Gene3D - 624 740 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00343 - - - csv:101217847 1189.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01054 Lsi-Chr5:18063681 Lsi09g00343 Lsi-Chr9:3549223 0 dispersed
Lsi09g00343 Lsi-Chr9:3549223 Lsi09g00345 Lsi-Chr9:3588571 0 dispersed
Lsi09g00341 Lsi-Chr9:3541767 Lsi09g00343 Lsi-Chr9:3549223 0 proximal
Lsi09g00342 Lsi-Chr9:3543450 Lsi09g00343 Lsi-Chr9:3549223 1.36E-74 tandem
Lsi09g00343 Lsi-Chr9:3549223 Lsi09g00344 Lsi-Chr9:3558100 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g436 . . . . . . . . . Cmo16g01025 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00343 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00343 Lsi_Chr09 FPKM 3.61698 3.257821 0.391643 0.321852 19.64299 22.48818 21.676912 0.017025 0.0 0.0