Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00345 ATGGTTGTTCTTCCACTCTTTTGCATATTTTTCTTGCTTAACTTTCATGGCAATGTTGCCATGAAAACTAATGTTTCAGATACTTCCAACACAATCAAATTACAAACCTACATCGTCCATGTGCAACAGCCAGAGCTCGAGAGTTCGGATGACACCTTTGATCTAGAAAGTTGGTATACATCATTCTTACCGAAAATGATCGAGACGTCGAACGAACAATCACGGTTACTTTACTCATATCGACATGTGATGAGTGGTTTTTCTGCAAGACTTACAGAAGAACAAGTTAAAGCCATGGAAGAGAAGGATGGTTTTATCTCGGCCAGGCCGGAAACCATATTGAATTTGCACACAACTCATACACCTGAGTACTTGGGGCTGAACCAACAATTTGGTTTGTGGAAAGATTCAAATTTTGGAAAGGGAGTGATCATAGGAGTGTTGGATACTGGAATTAATCCTGATCATCCTTCGTTTAATGATGATGGAATGCCACAACCACCAGCTAAATGGAAAGGAAGATGTGAGTTTGGTGCTTCCATTTGTAATAACAAGTTGATTGGTGCAAGAACTTTCAATCGTGCTAATACTATTTTGATGGGGGAATCACCTATTGATGAAAATGGACATGGCACTCACACAGCAAGCACGGCTGCAGGCACTTTCGTTGAAGGTGCTGAAGCTTTGGGAAATGCAAGAGGCAAGGCAGTTGGAATTGCACCTTTAGCTCACGTTGCAATGTATAAAGTTTGTTCTTCAAAAGACTGCTCGAGTAGCGATATACTTGCCGGGTTAGATGCTGCAATTGACGACGGTGTTGATGTGCTCTCAATCTCCCTCGGTTCCCGTTCGAGTAATTCGCTTGTTGGCGACGATGTTGCAATGGGTTCATTTTCAGCCATTAAAAAGGGAATTTTTGTGAGTTGTTCAGCTGGGAATAAAGGCCCTTCCAAAAGCACATTAACCAACGATGCACCATGGATTCTAACAGTTGGAGCAAGCACTATTGATCGAACAATTGCTGCATTAGCAAAGCTTGGAAATGGTGAAGTCCATGTCGGTGAATCTCTGTTCCAGCCAAGAGATTTCACATCAACATTCTTACCACTTGTATATGCTGGCAACAGTGGAATCAAACGGTCTGAATTTTGTGTTCAAGGCTCGCTTGCAAACTTGGATGTGAAAGGAAAAGTTGTGGTATGTGAAACAGGAGGAAATATAGACAGAGTTAAAAAAGGGTTGGTAGTGAAAAATGCTGGTGGAGCTGCCATGATTCTTATAAATCAAAAACCAAATGGGTTCACTACTTCAGCCGATGCTCATGTTCTTCCAGCAACTCGGGTAAGCTATGAAGCTGGACTCAAAATCAAAGCATATATAAGTTCATCACACAATCCAAGAGCATCAATTTCATTTAAGGGAACAATGATTGAAGGCTCAAACCCCAATTTCTCCCCTGCCATGGCTTCTTTCTCTTCTCGAGGGCCCTGCCTTTACAGCCCTGGAATCTTGAAACCCGATATAACAGGCCCTGGTGTCAACATTCTCGCAGCTTGGCCATTCCCATTAGACAGCAATAAAAACACAAAATCAACATTTTATGTTAAGTCAGGAACATCAATGGCTTGTCCTCATTTAAGTGGAATTGCAGCTTTGATCAAAAGTGTTCATCCTAATTGGTCCCCTGCTGCCATAAAATCTGCCATTATGACCTCTGCAGATGTAATAAACGCTCAAGGGAAACCAATCGTGGATCAAGATTTGAAACCGGCGAACTTTTTTGCTATGGGGTCCGGACATGTTAATCCATCAAAAGCAGCTGACCCAGGATTGGTTTACGACATTCAAGCTGATGACTACGTTCGTTATCTTTGTGGTTTGTACGCAAATGTCCAAGTCTCGACGATTGTTCGTAGACAAATAACATGTTCGACGGTATCAAAAATTCGAGAAGGGGATTTGAATTATCCTTCATTTTCTGTGACGTTGGGAGCCTCACAGACGTTTAGTAGAACAGTGACAAATGTGGGTGATGCAAATTCAGTTTATTCCGCCATTGTTGAGGCGCCGGTTGGAGTTTCAGTGAGAGTTACACCAAGCAATTTGAAATTCTCGAGGGTGAATGAAAAAATCACATATTCAGTAACTTTCAGTGTGGATGCTTTAGTTAAAGTGACGAGTGAGTTCAGTGAAGGGTATCTCAAATGGGTTTCTGATAAACACTTGGTGAGGAGTCCAATCTCTGTGAAATTCAAGTAA 2259 41.79 MVVLPLFCIFFLLNFHGNVAMKTNVSDTSNTIKLQTYIVHVQQPELESSDDTFDLESWYTSFLPKMIETSNEQSRLLYSYRHVMSGFSARLTEEQVKAMEEKDGFISARPETILNLHTTHTPEYLGLNQQFGLWKDSNFGKGVIIGVLDTGINPDHPSFNDDGMPQPPAKWKGRCEFGASICNNKLIGARTFNRANTILMGESPIDENGHGTHTASTAAGTFVEGAEALGNARGKAVGIAPLAHVAMYKVCSSKDCSSSDILAGLDAAIDDGVDVLSISLGSRSSNSLVGDDVAMGSFSAIKKGIFVSCSAGNKGPSKSTLTNDAPWILTVGASTIDRTIAALAKLGNGEVHVGESLFQPRDFTSTFLPLVYAGNSGIKRSEFCVQGSLANLDVKGKVVVCETGGNIDRVKKGLVVKNAGGAAMILINQKPNGFTTSADAHVLPATRVSYEAGLKIKAYISSSHNPRASISFKGTMIEGSNPNFSPAMASFSSRGPCLYSPGILKPDITGPGVNILAAWPFPLDSNKNTKSTFYVKSGTSMACPHLSGIAALIKSVHPNWSPAAIKSAIMTSADVINAQGKPIVDQDLKPANFFAMGSGHVNPSKAADPGLVYDIQADDYVRYLCGLYANVQVSTIVRRQITCSTVSKIREGDLNYPSFSVTLGASQTFSRTVTNVGDANSVYSAIVEAPVGVSVRVTPSNLKFSRVNEKITYSVTFSVDALVKVTSEFSEGYLKWVSDKHLVRSPISVKFK 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3588571 3590829 + Lsi09G003450.1 Lsi09g00345 669958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00345 752 CDD Peptidases_S8_3 114 574 IPR034197 -
Lsi09g00345 752 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 749 IPR045051 -
Lsi09g00345 752 Gene3D Peptidase S8/S53 domain 142 620 IPR036852 GO:0004252|GO:0006508
Lsi09g00345 752 Pfam Peptidase inhibitor I9 36 117 IPR010259 -
Lsi09g00345 752 Gene3D - 337 477 - -
Lsi09g00345 752 Pfam PA domain 369 456 IPR003137 -
Lsi09g00345 752 Pfam Fibronectin type-III domain 653 749 IPR041469 -
Lsi09g00345 752 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 117 IPR037045 -
Lsi09g00345 752 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 31 749 - -
Lsi09g00345 752 SUPERFAMILY PA domain 368 460 IPR046450 -
Lsi09g00345 752 ProSiteProfiles Serine proteases, subtilase domain profile. 124 607 - -
Lsi09g00345 752 Pfam Subtilase family 140 577 IPR000209 GO:0006508|GO:0008236
Lsi09g00345 752 SUPERFAMILY Subtilisin-like 116 611 IPR036852 GO:0004252|GO:0006508
Lsi09g00345 752 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 145 156 IPR023827 -
Lsi09g00345 752 CDD PA_subtilisin_like 345 470 - -
Lsi09g00345 752 Gene3D - 624 751 - -
Lsi09g00345 752 PRINTS Subtilisin serine protease family (S8) signature 537 553 IPR015500 -
Lsi09g00345 752 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Lsi09g00345 752 PRINTS Subtilisin serine protease family (S8) signature 206 219 IPR015500 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00345 - - - csv:101217847 1152.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00343 Lsi-Chr9:3549223 Lsi09g00345 Lsi-Chr9:3588571 0 dispersed
Lsi09g00345 Lsi-Chr9:3588571 Lsi04g01155 Lsi-Chr4:16301953 0 dispersed
Lsi09g00344 Lsi-Chr9:3558100 Lsi09g00345 Lsi-Chr9:3588571 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00348 Chy09g01158 . . . . . . . . . . . . . . . . . . Bhi12g00346 . . . . . Lcy12g1729 . . . . . . . Lsi09g00345 . . Cme09g01692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00345 Lsi_Chr09 FPKM 6.425853 5.227612 5.034606 4.98025 5.058839 4.849133 5.394027 5.476678 5.966043 5.632372