Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi09g00347 | ATGAGTCTGGTACTGACAACATCCACAGTAGAATGGGCTATGGCAGAGCTATTAAGGAACCCAAAAACTCTATCAAAGGCCAAAACAGAACTAATGGAAATCGTGGGAAAAGACAACCCAGTTGAGGAATCAGATTTCTCAAGGCTCCCTTTTCTTCAAGCAGTTGTAAAAGAAACTCTACGATTGCACCCACCAGCTCCTTTGCTACTCCCACGAAAGGCAAGACAAGACACTGAAATTGGAGGCTTCATAATTCCAAAAGATGCTCAAGTTCTTGTGAATGCATGGGACATTCAAAGGGACAAAAACATTTGGAATGATGCTGATTTGTTCAAACCAGAAAGGTTCTTAGAGTTAGAAAATTGCATTGATGATAAAGGTAGAAACTTGGAGTTGATTCCATTTGGTGCTGGAAGAAGAATTTGCCCTGGATTGCCTTTGGCTACTAGAATGGTTCATTGGATTCTTGCTTCTTTAATTCACTCTTTTGATTGGAAACTTGAAGATGGAATTACACCCAAAACCATGAATATGGATGATAAGTTTGGCCTTACCCTGGCTATGGCCCATCCTCTCAAAGCTATCCCTATCATTAGGAGGGGTCTTGATGTTGGTAGGTTATAA | 624 | 40.71 | MSLVLTTSTVEWAMAELLRNPKTLSKAKTELMEIVGKDNPVEESDFSRLPFLQAVVKETLRLHPPAPLLLPRKARQDTEIGGFIIPKDAQVLVNAWDIQRDKNIWNDADLFKPERFLELENCIDDKGRNLELIPFGAGRRICPGLPLATRMVHWILASLIHSFDWKLEDGITPKTMNMDDKFGLTLAMAHPLKAIPIIRRGLDVGRL | 207 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 3625622 | 3630146 | + | Lsi09G003470.1 | Lsi09g00347 | 669960 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi09g00347 | 207 | PRINTS | P450 superfamily signature | 142 | 153 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | PRINTS | P450 superfamily signature | 1 | 18 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | PRINTS | P450 superfamily signature | 54 | 65 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | PRINTS | P450 superfamily signature | 133 | 142 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 135 | 144 | IPR017972 | GO:0005506|GO:0016705 | |
| Lsi09g00347 | 207 | PRINTS | E-class P450 group I signature | 10 | 36 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | PRINTS | E-class P450 group I signature | 142 | 165 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | PRINTS | E-class P450 group I signature | 94 | 118 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | PRINTS | E-class P450 group I signature | 132 | 142 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | PRINTS | E-class P450 group I signature | 53 | 71 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | PANTHER | CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED | 6 | 198 | - | - | |
| Lsi09g00347 | 207 | Pfam | Cytochrome P450 | 6 | 182 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | SUPERFAMILY | Cytochrome P450 | 6 | 199 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi09g00347 | 207 | Gene3D | Cytochrome P450 | 5 | 195 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi09g00347 | Lsi-Chr9:3625622 | Lsi09g00583 | Lsi-Chr9:6268074 | 1.95E-94 | dispersed | |
| Lsi09g00347 | Lsi-Chr9:3625622 | Lsi09g00350 | Lsi-Chr9:3651984 | 1.85E-79 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi09g00347 | - | K23810 | csv:101218082 | 325.094 |