Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00347 ATGAGTCTGGTACTGACAACATCCACAGTAGAATGGGCTATGGCAGAGCTATTAAGGAACCCAAAAACTCTATCAAAGGCCAAAACAGAACTAATGGAAATCGTGGGAAAAGACAACCCAGTTGAGGAATCAGATTTCTCAAGGCTCCCTTTTCTTCAAGCAGTTGTAAAAGAAACTCTACGATTGCACCCACCAGCTCCTTTGCTACTCCCACGAAAGGCAAGACAAGACACTGAAATTGGAGGCTTCATAATTCCAAAAGATGCTCAAGTTCTTGTGAATGCATGGGACATTCAAAGGGACAAAAACATTTGGAATGATGCTGATTTGTTCAAACCAGAAAGGTTCTTAGAGTTAGAAAATTGCATTGATGATAAAGGTAGAAACTTGGAGTTGATTCCATTTGGTGCTGGAAGAAGAATTTGCCCTGGATTGCCTTTGGCTACTAGAATGGTTCATTGGATTCTTGCTTCTTTAATTCACTCTTTTGATTGGAAACTTGAAGATGGAATTACACCCAAAACCATGAATATGGATGATAAGTTTGGCCTTACCCTGGCTATGGCCCATCCTCTCAAAGCTATCCCTATCATTAGGAGGGGTCTTGATGTTGGTAGGTTATAA 624 40.71 MSLVLTTSTVEWAMAELLRNPKTLSKAKTELMEIVGKDNPVEESDFSRLPFLQAVVKETLRLHPPAPLLLPRKARQDTEIGGFIIPKDAQVLVNAWDIQRDKNIWNDADLFKPERFLELENCIDDKGRNLELIPFGAGRRICPGLPLATRMVHWILASLIHSFDWKLEDGITPKTMNMDDKFGLTLAMAHPLKAIPIIRRGLDVGRL 207
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 3625622 3630146 + Lsi09G003470.1 Lsi09g00347 669960
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00347 207 PRINTS P450 superfamily signature 142 153 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 PRINTS P450 superfamily signature 1 18 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 PRINTS P450 superfamily signature 54 65 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 PRINTS P450 superfamily signature 133 142 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 135 144 IPR017972 GO:0005506|GO:0016705
Lsi09g00347 207 PRINTS E-class P450 group I signature 10 36 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 PRINTS E-class P450 group I signature 142 165 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 PRINTS E-class P450 group I signature 94 118 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 PRINTS E-class P450 group I signature 132 142 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 PRINTS E-class P450 group I signature 53 71 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 6 198 - -
Lsi09g00347 207 Pfam Cytochrome P450 6 182 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 SUPERFAMILY Cytochrome P450 6 199 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00347 207 Gene3D Cytochrome P450 5 195 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00347 Lsi-Chr9:3625622 Lsi09g00583 Lsi-Chr9:6268074 1.95E-94 dispersed
Lsi09g00347 Lsi-Chr9:3625622 Lsi09g00350 Lsi-Chr9:3651984 1.85E-79 proximal
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00347 - K23810 csv:101218082 325.094