Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00352 ATGACCGTCCATTTAATATCAAGCAAAAGAAAACCCAATCTTCCACCGGGACCCAGATCCCTTCCGATCATCGGAAATTTATTAGATGTCGGGGACAAACCCGACAAATTTCTCGCCGACCTTGCTAAAGTCCACGGCCCAATTGCGTCATTAAAGCTCGGCCAAGTTAGTACCGTCGTGGTATCATCGCCGGAGACAATCGAAACCCACGACCATGTATTATCCTCCAGAGCCATACCGGACGCCGCCAGAGTTTCCGACCACGACCAAATAGGTATGCTGTGGGTTGTCCCGTCTTCGCCCATTTGGAAAAACATTAGAAATTTTTTCAAAAGCAGACTTTTTTCCCCAAAAAGTCTGGAGGCCAACGAAAGTCTCCGGCGAGGGAAGATTGAAGAACTTTTGAGTAGCATCCGGCGAAGCGCCGTGAACGGTGAGGTTGTGGATGTCGGAGCGGCTGCGTTTGGGATGTCGCTTAATTTGATGTCGTGTTCGATTTGGTCAATGGATTTGGCAGACACGAATTCTGAAATGAAGTTGGACATTCAGGGTGTAAGGAGGCGCAACACGGTTCATTTAAAAAAGATGTTTGATTTGATTGATGAGATGATTGATCGACAGCTGAAGATGTGGAAATCGCTTGATTTCACACCCAAATTTGATATGTTACATCATCTTCTTAACATGGAGGAGGAGAACGACGAGATCCTTCTAGATCGAAATCAAATTAGACATTTCATATTGGATCTATTTTTAGCAAGCACAGATACAAGTACAACAACAGTTCAATGGGCAATGGCATATCTTTTACAGAACCCAAAAGCTATGTCAAAAGCCAAAGAAGAGCTCGACCAAATGATCGGCAAAGGAAATCCAATTGAGGAATCACACATTGAGAAGCTTCCATATTTACAAGCAATCATCAAAGAAACCTTGCGATTGCAATCTTCACTTCTAATTCCTCGTAAAGTCGAATCAGAAGTAACCATTTCTGGCTTCACAATTCCAAAGGGTACCCAAATAATCGTCAATCTTTGGGCATTAGGCAGAGACTCGAATATTTGGGAACACCCAAATTCCTTCATACCAGAAAGGTTCTTTGGTAATTTCAATAATACCAAAGGTCGAAATTTTGAGTTCAGTCCATTCGGGAGTGGGAGGAGAATTTGCCCTGGACAACCATTAGCAGTGAGGGTAGTGCATTTGATTGTGGGTTCTTTGATTCATTGCTTTCATTGGAAGCTTGAAGATGGAGTTACACCACAAAATTTGAACATGGACGACAAATTTGGTTTAACTTTGGAGATGGCTCAACCTTTAAGAGCTATTCCTCTTTTAATTCAACCTTCACTTAATTAA 1359 42.46 MTVHLISSKRKPNLPPGPRSLPIIGNLLDVGDKPDKFLADLAKVHGPIASLKLGQVSTVVVSSPETIETHDHVLSSRAIPDAARVSDHDQIGMLWVVPSSPIWKNIRNFFKSRLFSPKSLEANESLRRGKIEELLSSIRRSAVNGEVVDVGAAAFGMSLNLMSCSIWSMDLADTNSEMKLDIQGVRRRNTVHLKKMFDLIDEMIDRQLKMWKSLDFTPKFDMLHHLLNMEEENDEILLDRNQIRHFILDLFLASTDTSTTTVQWAMAYLLQNPKAMSKAKEELDQMIGKGNPIEESHIEKLPYLQAIIKETLRLQSSLLIPRKVESEVTISGFTIPKGTQIIVNLWALGRDSNIWEHPNSFIPERFFGNFNNTKGRNFEFSPFGSGRRICPGQPLAVRVVHLIVGSLIHCFHWKLEDGVTPQNLNMDDKFGLTLEMAQPLRAIPLLIQPSLN 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3673185 3681224 - Lsi09G003520.1 Lsi09g00352 669965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00352 452 Gene3D Cytochrome P450 4 442 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 Pfam Cytochrome P450 15 173 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 Pfam Cytochrome P450 188 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 7 179 - -
Lsi09g00352 452 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 179 445 - -
Lsi09g00352 452 SUPERFAMILY Cytochrome P450 9 442 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS E-class P450 group I signature 390 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS E-class P450 group I signature 380 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS E-class P450 group I signature 262 288 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS E-class P450 group I signature 305 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS E-class P450 group I signature 344 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS E-class P450 group I signature 242 259 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS E-class P450 group I signature 42 61 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS P450 superfamily signature 381 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS P450 superfamily signature 306 317 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS P450 superfamily signature 390 401 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 PRINTS P450 superfamily signature 253 270 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00352 452 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 383 392 IPR017972 GO:0005506|GO:0016705
Lsi09g00352 452 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 7 179 - -
Lsi09g00352 452 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 179 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00352 - - - csv:101218322 699.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00350 Lsi-Chr9:3651984 Lsi09g00352 Lsi-Chr9:3673185 0 dispersed
Lsi09g00352 Lsi-Chr9:3673185 Lsi01g01891 Lsi-Chr1:21807366 1.19E-90 dispersed
Lsi09g00351 Lsi-Chr9:3660512 Lsi09g00352 Lsi-Chr9:3673185 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g442 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00349 Chy09g01155 . . . . . . . . . . . . . . . . . . Bhi12g00547 . . . . . . Cla01g00330 . . . . . . Lsi09g00352 . . Cme09g01689
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000276 0 5 1 0 1 4 0 5 5 7 5 5 3 10 7 9 5 5 4 5 6 6 4 5 7 13 5 4 4 6 146
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00352 Lsi_Chr09 FPKM 3.58551 2.899423 3.52086 4.120718 6.421354 4.71713 4.566211 3.125876 3.63447 3.564066