Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00361 ATGACCCAGACCCGATTCTTCCGGATTCGCAATTCCAAATCCGACGAAGCAGCAGAACCCACCACAAGCGGTGGCGGAGGAGCCGCCATGAGAGTCATAGTGCCTCTGCAAGGCGTCGTTCAAGGACGAGGCGGCGTCGTTTTGGGCTCTGTTATACCTTGCGTTCTCTTCTACTTTCTTCAGCTTTACTTGAAACGAAACCGGTCCGACCCGTCCCCGGACCCTCCTTCCTCGCCGGAGGTGGATTCTTCGGGGAACTCTTCGCCGTCGTCGAGTAATCAGTTAGTGGAGCTCTCTGTTCTGCCTCGAACATTGTCTCGGACCTTCCTCTCTCCCAGGTCGAGTGGGCCGATTTGCGTTTCGGGTCGGGCTAATTCGATTTCTAGAGTTGGGGATTCTTCGATTTTCGTTGGAATGAGAAGGTTCTTGGAGGACCCATTTGATGAATTGGATAACCCGACGGGAATTATTCAGCTTTCTGTTGCTGAGAGTAAGTTATCCTCGGACTTGGTGCAAAATTGGCTAACGGAGAATGGAAGAGATGCTATATTAGGAAGAGTGAATCATAATGAGCTGAGTGTAGCTGGGACTGTTAGTTATCAGCCTTCAGATGGATCGACGGATTTGAAACTGGCTGTAGCAAGCTTCATGTCTCAAGTTGTAGGGAACTCTGTTTCATTCATCCCTTCCCAATTAGTATTTACTACTGGAGTGGCCTTTGCAATCGAAACTCTTTGCTTTTGCATAGCAGACCCGGGACATGCGTTTCTTGTTCCTACGCCGTATTACCTTGGTCTTGACAATGATGTAAAATGGCGAACTGGGGTGGAGATAGTACCCGTTCCCTGCCGCAGTGCCGATAACTTCTGTTTAAGCATAACTTCTCTTGATCGATCATTCCATCAGGCAAGGAATCGCGGCCTTAAAGTTCGTGGGATTATAATCTCAAATCCCTCAATTCCAGTTGGAAATCAATTAAATAGAGAAACACTCTATGACCTTCTGGACTTTGCCAGGGAGAAAAACATCCATATCATATCAAATGAAATATTTGTAGGGTCGACCTATGGAAGTGAAGAGTTCGTGAGCATGGCTGAAATGATCGATGTAGAAGACAGCGACCGAGACAGAGTTCATATTACATATGGTTTATCTGAAGACATGTCACTTCCTGGTTTTGGAGTTGCTGCAATCTACTCTTTGAATGAGAATATCCTGGCTGCTGCTAGAAAACTGGCAAAGTTCTCATCTGTTTCTACCATAACCCAGAACCTCCTTTCTTCTATGCTTTCAGATACGCAATTCATCCAGAGGTTCATTCGGACCAATCGAGCGAGGCTTGGAGAAATGAATGGTAGATTCACTGCAGGGCTGAAGGAACTTGACATCAAATGCGTGAGGAGCAATGGAGGTTTCTACTGCTGGGCAGATATGAGCAATTTAATCCGTTCTTACAGCGAGAAAGGGGAACTTGAGCTCTGGGAAAAGTTGTTGGATATAGGTAAAGTTAATGTTACCCCTGGCTCTTGTTGTAATTGTATTGAACCAGGATGGTTTGGATTCTGTTTTACAACTTTGATTGATAAAGAAATACCTATTGTTATGGACCGAATTGGGAGAATTTCCGAAGCTTGTAAATCTTATACTTGA 1650 45.45 MTQTRFFRIRNSKSDEAAEPTTSGGGGAAMRVIVPLQGVVQGRGGVVLGSVIPCVLFYFLQLYLKRNRSDPSPDPPSSPEVDSSGNSSPSSSNQLVELSVLPRTLSRTFLSPRSSGPICVSGRANSISRVGDSSIFVGMRRFLEDPFDELDNPTGIIQLSVAESKLSSDLVQNWLTENGRDAILGRVNHNELSVAGTVSYQPSDGSTDLKLAVASFMSQVVGNSVSFIPSQLVFTTGVAFAIETLCFCIADPGHAFLVPTPYYLGLDNDVKWRTGVEIVPVPCRSADNFCLSITSLDRSFHQARNRGLKVRGIIISNPSIPVGNQLNRETLYDLLDFAREKNIHIISNEIFVGSTYGSEEFVSMAEMIDVEDSDRDRVHITYGLSEDMSLPGFGVAAIYSLNENILAAARKLAKFSSVSTITQNLLSSMLSDTQFIQRFIRTNRARLGEMNGRFTAGLKELDIKCVRSNGGFYCWADMSNLIRSYSEKGELELWEKLLDIGKVNVTPGSCCNCIEPGWFGFCFTTLIDKEIPIVMDRIGRISEACKSYT 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3724664 3730267 + Lsi09G003610.1 Lsi09g00361 669974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00361 549 Pfam Aminotransferase class I and II 196 538 IPR004839 GO:0009058|GO:0030170
Lsi09g00361 549 MobiDBLite consensus disorder prediction 68 94 - -
Lsi09g00361 549 Gene3D - 179 432 IPR015421 GO:0003824
Lsi09g00361 549 SUPERFAMILY PLP-dependent transferases 128 541 IPR015424 -
Lsi09g00361 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 409 432 - -
Lsi09g00361 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 307 331 - -
Lsi09g00361 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 343 366 - -
Lsi09g00361 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 377 401 - -
Lsi09g00361 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 231 251 - -
Lsi09g00361 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 159 185 - -
Lsi09g00361 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 274 - -
Lsi09g00361 549 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 21 545 - -
Lsi09g00361 549 PANTHER AMINOTRANSFERASE ACS12-RELATED 21 545 - -
Lsi09g00361 549 MobiDBLite consensus disorder prediction 79 94 - -
Lsi09g00361 549 MobiDBLite consensus disorder prediction 1 28 - -
Lsi09g00361 549 CDD AAT_like 195 540 - -
Lsi09g00361 549 Gene3D Aspartate Aminotransferase, domain 1 145 537 IPR015422 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00361 K14270 ACS10_12; aminotransferase - csv:101208573 968.763
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00361 Lsi-Chr9:3724664 Lsi09g01596 Lsi-Chr9:24086088 9.65E-116 dispersed
Lsi05g01301 Lsi-Chr5:20770072 Lsi09g00361 Lsi-Chr9:3724664 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g453 . . . . . . . . . . . Cma15g01179 . Car15g01067 . . . . . . . . . . . . . . . . . . . . . . Csa05g00357 Chy09g01150 . Blo03g00382 . . . . Bpe11g00697 . . . . Cmo15g01239 . . . . . Cpe13g00195 Bhi12g00353 . . Lac11g2187 Hepe06g1617 . Lcy12g1741 Cla01g00335 Cam01g0348 Cec01g0344 Cco01g0356 Clacu01g0352 Cmu01g0332 Cre09g2178 Lsi09g00361 . . Cme09g01682
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002106 1 2 3 1 2 2 2 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 2 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00361 Lsi_Chr09 FPKM 2.12397 1.619136 0.568542 0.987628 1.519957 1.279371 0.963429 2.633534 2.474542 2.399155