Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00363 ATGTGCCAGGGAGGGTTTTGGAGTTTTGAGGTCCTTCGATCTTCTACTGGGCTTAAGAGCGAATTAGAGCAAACGAGTTCGAAAACTATGGGTTCGGAACAGAACGATGGCACAAGCTACCAGCCATCGGAGCCGAAGCTCTGCGCGAACAACTGCGGCTTCTTTGGTTCAGCAGGTACTGAGAATCTCTGCTCGAAGTGCTACAGAGACTCTCGAATCAAAGAAGAGCAAGCGGCTTCAGCAAAAGCAGCGATGGAGAAATCCCTTCAGTCCAAAATTTTAAAGCCGGCTGAAGGTAATTCTCCAGTTGTCTTATCCGATTCACCAGTGGATTCAGCTTCATCGTCATCATCCACTGGAATTTCCCTCGGCAGTTCCAAGAAATCGCCATCGCCGGATATTCCAAACCGGTGCCGGAGCTGCAATAAGAAGGTGGGATTGATGGGGTTCAAGTGCAAGTGCGAGCGAACCTTCTGTGGAATTCACCGGTACCCAGAGAGACACGACTGTTGTTACGACTTCAAAAGTATTGGGCGGGAGGAGATCGCCACGGCCAATCCTATAGTGAAGGCCGACAAGGTCGAAAGGTTCTGA 594 50.17 MCQGGFWSFEVLRSSTGLKSELEQTSSKTMGSEQNDGTSYQPSEPKLCANNCGFFGSAGTENLCSKCYRDSRIKEEQAASAKAAMEKSLQSKILKPAEGNSPVVLSDSPVDSASSSSSTGISLGSSKKSPSPDIPNRCRSCNKKVGLMGFKCKCERTFCGIHRYPERHDCCYDFKSIGREEIATANPIVKADKVERF 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3741755 3744797 + Lsi09G003630.1 Lsi09g00363 669976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00363 197 ProSiteProfiles Zinc finger AN1-type profile. 132 178 IPR000058 GO:0008270
Lsi09g00363 197 ProSiteProfiles Zinc finger A20-type profile. 42 76 IPR002653 GO:0003677|GO:0008270
Lsi09g00363 197 MobiDBLite consensus disorder prediction 105 134 - -
Lsi09g00363 197 Pfam AN1-like Zinc finger 138 173 IPR000058 GO:0008270
Lsi09g00363 197 MobiDBLite consensus disorder prediction 100 134 - -
Lsi09g00363 197 Gene3D - 111 193 IPR035896 -
Lsi09g00363 197 SMART A20_3 45 69 IPR002653 GO:0003677|GO:0008270
Lsi09g00363 197 Pfam A20-like zinc finger 47 69 IPR002653 GO:0003677|GO:0008270
Lsi09g00363 197 SMART AN1_Zf_4 138 175 IPR000058 GO:0008270
Lsi09g00363 197 Gene3D - 29 93 - -
Lsi09g00363 197 SUPERFAMILY AN1-like Zinc finger 129 192 IPR035896 -
Lsi09g00363 197 MobiDBLite consensus disorder prediction 18 42 - -
Lsi09g00363 197 PANTHER AN1-TYPE ZINC FINGER PROTEIN 30 197 - -
Lsi09g00363 197 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 30 197 - -
Lsi09g00363 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 47 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00363 - - - cmo:103482674 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02587 Lsi-Chr2:32315051 Lsi09g00363 Lsi-Chr9:3741755 3.63E-39 dispersed
Lsi09g00363 Lsi-Chr9:3741755 Lsi10g01159 Lsi-Chr10:15891245 2.07E-46 dispersed
Lsi01g01229 Lsi-Chr1:10496040 Lsi09g00363 Lsi-Chr9:3741755 9.87E-51 transposed
Lsi05g01302 Lsi-Chr5:20780857 Lsi09g00363 Lsi-Chr9:3741755 6.77E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0728 . Csa05g00359 . . . . . . . . . . . . . . . . . . Cpe13g00197 Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 Lsi09g00363 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005235 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 4 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00363 Lsi_Chr09 FPKM 8.69609 8.724056 3.044069 3.565498 9.03842 10.39095 8.407328 0.10871 0.0 0.0