Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00364 ATGGCCGCTTCTGGGGGTACTAGTTATAGAAATGGCGCCACTTCCAGAAACTCTCTTAAGCTCGATAAGCCCTTTTCTGCTAATTCCAACCCCAAGTCTTCTCTCAAGTCAAAGTCTCTTCCCAATTCTGCTCTTCGCCGCAGTAGCCCTGCATCTCTCGGAGCTGCCAAGGATGATGGTGGAGTTCCTGGAAGAGTTCGAGTGGCTGTTAGATTGCGACCACGCAATACAGAAGAATTGATAGCTGATGCTGATTTTGCTGATTGTGTAGAATTACAGCCAGAGGTACAATGGCACGATATTACACTAATAAATACCATCTTTACCATAATTATAGTCTCAGAATATCACAATCTATTTCAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACGGAGTTTGCATCTCAAAAACGTGTTTATGAGGTGGTGGCGAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAGACTGGTACCGTACCTTTAATGGCTAACCTTCATTCTCTACAAACATACGTACAGCTTTATATGGAGAGCATACAGGACCTTCTTGACCCTGCAAATGATAACATTTCCATTGTAGAAGATCCTAAAACTGGAGACGTTTCGGTACCTGGGGCTAGCCTTGTAGAAATTAGACACCAGGAGAGCTTTGTGGAACTACTAAGATTGGGGGAAGCTCATCGGTTTGCTGCGAATACAAAACTGAACACTGAATCTTCTCGTAGTCATGCAATTCTCATGGTACACGTAAAGCGGTCTCTAAAAGGAAGGGATTCAACTCTGTCAAGTGATATTGGTGGGAATTCTCATTTGGTTAAGACCTTGAAACCTCCAATCGTCCGGAAGGGAAAATTAGTGGTGGTGGATCTTGCTGGTTCTGAGCGTATTGACAAATCAGGTGTGTATATGCAGCGCCTACATACGTTTAGTATTTCAGTGGTGTATGTCTTTAGCACCAAATCTAGAAGTCGAATGCTAGTTGTCTACTCAACTGAAATTAAGTTGTTACTCCCTTCACTTGATGTTGATTTTATTATTAATGTTACATTGTCTTTCAATTTTTTCATAAGAAAACTTGGCTTTCTCAGCGAATATCAACACTTTGCTGAAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATCAATCTCTCCCTGAGTGCATTAGGGAAGTGCATAAATGCACTTGCTGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTGACAAGATTACTTCGCGATTCATTTGGAGGAACGGCAAGAACTTCACTGATTATTACTATTGGTCCTTCACCTCGACATCGTGGAGAGACTACAAGTACAATATCGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGCTGAAGATCAAAGAAGAATTTGATTATAAAAGTTTGTCAAGAAGGTTAGACATTCAATTAGACAAACTGATTGCAGAACATGAAAGGCAGCAAAAGGCGTTTGAGAATGAAATTGAAAGAATTACCAAAGAAGCACAGGATCGCATATCTGAGGCTGAAAGAAGTCATTCAAATGCCCTGGAGAAGGAAAGGCTGAAATATCAGAAGGATTACATGGAATCAATCAAGAAGCTTGAAGATCAACTGTTGGTGAAGCAGAAGAAGCTTGGTGGGGAGAAAGTAATTAATAGAGAAGTTGCTGCTTCTGCTTCTAGTGTAATTGCTAATGGAGAGGGTTCGATAGTGTCTGCTGACAAGGAAGTGGCAGAGCTAAAGAAGTTGGTTAACAAGGAAACGCTTTTGAGGAAAGCAGCTGAAGAGGAAGTAAACAATCTTAGAAATCAAGTAGCCCAACTGAAGAGATCAGAGACGTCTTGCAATTCAGAGATCTCAAAGCTTCGCAAGACTCTGGAAGATGAGCAAAATCAGAAAAAGAAACTAGAAGGAGATATAGCTATGCTACAAAGCCAGTTGTTGCAATTGAGCTTTGAAGCAGATGAGACCAGTAGGCGACTGGACAGAGGTGAGCCTGGGAAAGTCCTCAGTTCTCTAGATTCTCTCGTGCAACAAGTTAAGCATTCACAGGCTCAGGATGCTGGAAACGGGGAGAAGGCTTCAGTGGCCAAACTCTTTGAGCAAGTTGGACTGCAAAAGATCTTGTCGTTGCTGGAAGCTGAAGATTACGACGTCAGAATTCATGCTGTGAAAGTGGTTGCAAATCTGGCAGCTGAAGAAACAAATCAGCAAAAGATTGTTGAGGCTGGGGGCCTTTCATCTTTGCTGATGCTACTCAGAAGCACTGAGGATGAGACAATTCATAGAGTTGCTGCAGGGGCAATTGCAAATCTGGCAATGAATGAGACCAACCAAGAGCTCATTATGTCCCAAGGAGGCATTAGCTTACTGTCCATGACCGCTGCCAACGCTGAGGATCCCCAAACGCTTCGTATGGTTGCTGGAGCAATCGCCAATTTGTGTGGCAATGATAAGTTGCAGACAAAGCTAAGGGGCGAAGGCGGCATTAAGGCATTGCTTGGTATGGTAAGATGCAGACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCAAATTTTGCGAAGTGCGAGTCGAGGGCCTCTACACAAGGCACCAAGGCTGGAAAGTCTTTCTTAATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCAACGATAAAACGACATATCGAACTTGCACTCTGTCATTTAGCACAACACGAAGTGAACGCAAAAGACATGATCAGTGGAGGTGCTCTTTGGGAACTAGTTCGGATATCGCGGGACTGTTCACGGGAAGACATAAGGACTCTTGCACATCGAACATTAATATCGAGTCCAACATTTCAAGCTGAAATGAGACGATTACGAATAGATTATTGA 2955 42.81 MAASGGTSYRNGATSRNSLKLDKPFSANSNPKSSLKSKSLPNSALRRSSPASLGAAKDDGGVPGRVRVAVRLRPRNTEELIADADFADCVELQPEVQWHDITLINTIFTIIIVSEYHNLFQLKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTIMAYGQTGTVPLMANLHSLQTYVQLYMESIQDLLDPANDNISIVEDPKTGDVSVPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGRDSTLSSDIGGNSHLVKTLKPPIVRKGKLVVVDLAGSERIDKSGVYMQRLHTFSISVVYVFSTKSRSRMLVVYSTEIKLLLPSLDVDFIINVTLSFNFFIRKLGFLSEYQHFAEGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLIITIGPSPRHRGETTSTISFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQQKAFENEIERITKEAQDRISEAERSHSNALEKERLKYQKDYMESIKKLEDQLLVKQKKLGGEKVINREVAASASSVIANGEGSIVSADKEVAELKKLVNKETLLRKAAEEEVNNLRNQVAQLKRSETSCNSEISKLRKTLEDEQNQKKKLEGDIAMLQSQLLQLSFEADETSRRLDRGEPGKVLSSLDSLVQQVKHSQAQDAGNGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLSMTAANAEDPQTLRMVAGAIANLCGNDKLQTKLRGEGGIKALLGMVRCRHPDVLAQVARGIANFAKCESRASTQGTKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLISSPTFQAEMRRLRIDY 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3757399 3767924 + Lsi09G003640.1 Lsi09g00364 669977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00364 984 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 726 768 IPR000225 GO:0005515
Lsi09g00364 984 Coils Coil 499 541 - -
Lsi09g00364 984 SUPERFAMILY ARM repeat 715 967 IPR016024 -
Lsi09g00364 984 ProSitePatterns Kinesin motor domain signature. 305 316 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lsi09g00364 984 Gene3D - 691 816 IPR011989 -
Lsi09g00364 984 ProSiteProfiles Kinesin motor domain profile. 65 476 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00364 984 SMART arm_5 798 839 IPR000225 GO:0005515
Lsi09g00364 984 SMART arm_5 756 797 IPR000225 GO:0005515
Lsi09g00364 984 SMART arm_5 716 755 IPR000225 GO:0005515
Lsi09g00364 984 SMART arm_5 840 880 IPR000225 GO:0005515
Lsi09g00364 984 Pfam Armadillo/beta-catenin-like repeat 759 796 IPR000225 GO:0005515
Lsi09g00364 984 Coils Coil 600 669 - -
Lsi09g00364 984 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 767 810 IPR000225 GO:0005515
Lsi09g00364 984 PRINTS Kinesin heavy chain signature 167 188 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00364 984 PRINTS Kinesin heavy chain signature 426 447 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00364 984 Pfam Kinesin motor domain 192 326 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00364 984 Pfam Kinesin motor domain 391 476 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00364 984 Pfam Kinesin motor domain 71 180 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g00364 984 Gene3D - 817 971 IPR011989 -
Lsi09g00364 984 PANTHER KINESIN-LIKE PROTEIN KIN-UA 121 180 IPR033291 GO:0008017|GO:0032886|GO:0048364
Lsi09g00364 984 PANTHER KINESIN-LIKE PROTEIN KIN-UA 47 97 IPR033291 GO:0008017|GO:0032886|GO:0048364
Lsi09g00364 984 PANTHER KINESIN-LIKE PROTEIN KIN-UA 192 976 IPR033291 GO:0008017|GO:0032886|GO:0048364
Lsi09g00364 984 MobiDBLite consensus disorder prediction 1 59 - -
Lsi09g00364 984 MobiDBLite consensus disorder prediction 1 49 - -
Lsi09g00364 984 PANTHER KINESIN-RELATED 121 180 IPR027640 GO:0003777|GO:0007018
Lsi09g00364 984 PANTHER KINESIN-RELATED 47 97 IPR027640 GO:0003777|GO:0007018
Lsi09g00364 984 PANTHER KINESIN-RELATED 192 976 IPR027640 GO:0003777|GO:0007018
Lsi09g00364 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 490 IPR027417 -
Lsi09g00364 984 Gene3D Kinesin motor domain 385 521 IPR036961 -
Lsi09g00364 984 Gene3D Kinesin motor domain 58 181 IPR036961 -
Lsi09g00364 984 Gene3D Kinesin motor domain 187 334 IPR036961 -
Lsi09g00364 984 SMART kinesin_4 63 484 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00364 - - K10396 csv:101209471 1081.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00364 Lsi-Chr9:3757399 Lsi02g00207 Lsi-Chr2:1725699 1.72E-24 dispersed
Lsi08g00701 Lsi-Chr8:15309480 Lsi09g00364 Lsi-Chr9:3757399 6.29E-55 transposed
Lsi05g01969 Lsi-Chr5:26822264 Lsi09g00364 Lsi-Chr9:3757399 1.67E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00364 Lsi_Chr09 FPKM 19.36433 21.023792 20.62059 20.432953 20.553162 20.106861 20.786873 20.420872 18.176146 21.930492