Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00365 ATGGATTCCCACTCTCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACAACACCAATTCCACAACAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAACGCGACCGCGACGACGATGACCACCACACCAACAACTCCGGTCCCAACAGCGCTGGTGACGGCGGCGCCGGCCCCGGCGACGGAGAAATCACTCGACGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGTGACAGTGCTAACGCCCTTCGTACCCACGTCATCGAAGTTACCGATGGCTGCGACATCGTCGACAGCGTCGCTACCTTCGCCCGCCGTCGCCAACGTGGAGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTCCGTCAACCCGCTTCCCCCGGTGCAATTGTCAACTTACACGGCCGTTTCGAGATCTTATCTCTTGCCGGCTCTTTTCTTCCTCCCCCTGCTCCTCCAGCTGCTACTACTTTGACTATTTATCTCGCTGGTGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCCGGTCCCGTTGTTATCATGGCTGCCTCCTTTAGTAACGCGGCTTATGAACGGCTTCCGTTGGAGGATGATGACCAGCCACCGCTTCCGTCGCTGCAAGGCAGCGGCGGAATTGGGTCTCCGGATGAAGTTGGACAGTCCCAAACGGCGCAAACGGCGCATCATCAGCAACAACAGCAGAATCAACAACAACAGCAACTTCTTAACGACGGTAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCCGAAGCAGCTTATTGGGCGACTGCCCGTCCTCCGTACTAA 915 54.32 MDSHSLPPPFHTRDFHLQQHQFHNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSGPNSAGDGGAGPGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGSGGIGSPDEVGQSQTAQTAHHQQQQQNQQQQQLLNDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3772128 3773042 - Lsi09G003650.1 Lsi09g00365 669978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00365 304 MobiDBLite consensus disorder prediction 33 51 - -
Lsi09g00365 304 Gene3D - 99 227 - -
Lsi09g00365 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 304 - -
Lsi09g00365 304 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 227 - -
Lsi09g00365 304 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 213 IPR005175 -
Lsi09g00365 304 ProSiteProfiles PPC domain profile profile. 96 235 IPR005175 -
Lsi09g00365 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 304 IPR014476 GO:0003680
Lsi09g00365 304 MobiDBLite consensus disorder prediction 1 91 - -
Lsi09g00365 304 MobiDBLite consensus disorder prediction 240 271 - -
Lsi09g00365 304 MobiDBLite consensus disorder prediction 221 288 - -
Lsi09g00365 304 CDD DUF296 100 166 IPR005175 -
Lsi09g00365 304 PIRSF ESCAROLA 11 304 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00365 Lsi-Chr9:3772128 Lsi09g01903 Lsi-Chr9:27888660 5.98E-86 dispersed
Lsi05g01968 Lsi-Chr5:26816488 Lsi09g00365 Lsi-Chr9:3772128 4.88E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00365 - - csv:101209716 423.705