Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00368 ATGGAGGGAAGGGATGGTGGTGGTGCAAGTAGTGGGGTTACTGTGGTGGGATCAGATGCTCCGTCTGAATACAAAATAGCTCCGAGGACCTCCGATAACCCACCGCAGACTGGTGGATCAACGCCGCCGCCGGCGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTAAGGTATCTGCGCAGCCTCCGCCGCCTACGGCGGCCTCCTCAGTACCGGGAAAGAAGAAAAGAGGGAGGCCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTCATCAGTGCCGCCGCCGGTGATCGACTTCTCTACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTGGATAATTTAGGCGACTGGGTTCCATGTTCTGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAATGCGGGCGAGGATGTCACGATGAAGATTATATCCTTTTCTCAACAAGGACCTCGAGCTATATGTATTTTATCTGCAAACGGTGTGATCTCAAGTGTCACTCTTCGTCAGCCTGATTCGTCTGGAGGAACATTAACTTATGAGGGACGCTTTGAAATACTTTCCTTGTCTGGCTCATTCATGCCTAGTGACAATGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGTGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACCGAAAAAGCCAAAACATGATACTATTTCACCGGCTCCGCCAACTGCTGCCATTCCAATATCTTGCGTCGATCCTAAGTCCAACCTCTCACCTTCCAGTTCCTTTCGTGGCGATAACTGGTCGATGCTGCCAAATGATTCAAGGAATAAGTCAACTGATATCAATGTATCTCTACCCAGTGCTTGA 993 49.75 MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTPPPATQSTSTPSASAKVSAQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSVGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPNDSRNKSTDINVSLPSA 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3836578 3840552 + Lsi09G003680.1 Lsi09g00368 669981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00368 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Lsi09g00368 330 MobiDBLite consensus disorder prediction 264 330 - -
Lsi09g00368 330 MobiDBLite consensus disorder prediction 294 330 - -
Lsi09g00368 330 CDD DUF296 146 237 IPR005175 -
Lsi09g00368 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 10 328 - -
Lsi09g00368 330 MobiDBLite consensus disorder prediction 29 64 - -
Lsi09g00368 330 ProSiteProfiles PPC domain profile profile. 142 281 IPR005175 -
Lsi09g00368 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 328 IPR039605 GO:0003680
Lsi09g00368 330 Gene3D - 147 276 - -
Lsi09g00368 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 265 - -
Lsi09g00368 330 MobiDBLite consensus disorder prediction 1 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00770 Lsi-Chr8:16089755 Lsi09g00368 Lsi-Chr9:3836578 1.44E-62 dispersed
Lsi09g00265 Lsi-Chr9:2791224 Lsi09g00368 Lsi-Chr9:3836578 6.08E-57 dispersed
Lsi09g00368 Lsi-Chr9:3836578 Lsi09g00539 Lsi-Chr9:5661639 4.54E-89 dispersed
Lsi11g00064 Lsi-Chr11:740003 Lsi09g00368 Lsi-Chr9:3836578 2.53E-130 transposed
Lsi05g01307 Lsi-Chr5:20815809 Lsi09g00368 Lsi-Chr9:3836578 6.23E-81 wgd
Lsi05g01962 Lsi-Chr5:26747752 Lsi09g00368 Lsi-Chr9:3836578 7.66E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00368 - - csv:101210208 546.969