Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00370 ATGATGCCTATAGGGACACCAAGGGTGCCTTACAGAACTCCTGGCGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTATATCGAGAACGAGTTATTTTCATTGGGCAAAACATTGACGAAGAGTTTAGCAATCAAATTTTGGCCACAATGCTATATCTTGACAGCATTGAAACTTCCAAGAAACTCTATATGTACATAAATGGCCCAGGTGGAGATCTAACTCCAAGTATGGCCATCTACGATACAATGCAGAGCTTAAAGAGTCCTGTAGCTACCCATTGTGTGGGTTACGCCTATAATCTGGCAGCCTTTCTTCTAGCAGCTGGAGAAAAGGGTAACCGTTTTGCTATGCCTCTATCAAGAATTGCTTTGCAGTCCCCAGCTGGATCTGCTCGCGGCCAGGCTGATGATATTCAAAATGAAGCAAACGAGCTCTTGAGAATTAGGGATTATCTTTATGATGAACTTTCTAAGAAAACAGGCCAGCCTGTTGAAAAGATTAACAAGGACTTGAGTCGAATGAAGCGATTTAATGCTCAGGAAGCTCTTGATTATGGACTTATTGACCGTATAGTTAGGCCACCTCGCATTAAGGCTGATGCACCTCGCAAGGATGCTGGAACAGGGCTTGGTTAG 642 44.08 MMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIETSKKLYMYINGPGGDLTPSMAIYDTMQSLKSPVATHCVGYAYNLAAFLLAAGEKGNRFAMPLSRIALQSPAGSARGQADDIQNEANELLRIRDYLYDELSKKTGQPVEKINKDLSRMKRFNAQEALDYGLIDRIVRPPRIKADAPRKDAGTGLG 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3854668 3858377 - Lsi09G003700.1 Lsi09g00370 669983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00370 213 SUPERFAMILY ClpP/crotonase 16 197 IPR029045 -
Lsi09g00370 213 CDD S14_ClpP_2 23 193 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi09g00370 213 PRINTS Clp protease catalytic subunit P signature 94 111 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi09g00370 213 PRINTS Clp protease catalytic subunit P signature 63 83 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi09g00370 213 PRINTS Clp protease catalytic subunit P signature 172 191 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi09g00370 213 PRINTS Clp protease catalytic subunit P signature 115 134 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi09g00370 213 PRINTS Clp protease catalytic subunit P signature 23 38 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi09g00370 213 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 207 IPR023562 -
Lsi09g00370 213 Pfam Clp protease 20 195 IPR023562 -
Lsi09g00370 213 Gene3D - 7 200 - -
Lsi09g00370 213 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 1 207 - -
Lsi09g00370 213 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 5 197 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00370 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - pvy:116141985 406.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00283 Lsi-Chr5:3685879 Lsi09g00370 Lsi-Chr9:3854668 2.20E-23 dispersed
Lsi07g01255 Lsi-Chr7:18346699 Lsi09g00370 Lsi-Chr9:3854668 2.44E-36 dispersed
Lsi08g00143 Lsi-Chr8:3066655 Lsi09g00370 Lsi-Chr9:3854668 4.44E-23 dispersed
Lsi09g00370 Lsi-Chr9:3854668 Lsi10g00353 Lsi-Chr10:5525270 1.80E-31 dispersed
Lsi09g00370 Lsi-Chr9:3854668 Lsi03g00572 Lsi-Chr3:6911665 1.33E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00370 Lsi_Chr09 FPKM 2.047619 1.69691 6.002468 6.516196 0.483922 0.0 0.0 5.462686 5.246737 7.138834