Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00384 ATGATTTTTTTTTCCTTCCTTGAGAAAATGATTGATGCCCTTTTGGAAGGTAAAGGCAGAGCCATAGATTCCTCATCTTGTCTTGTCTCCACTGGATTTTCTTTATGCCAATCTTCGTCAACATTACAAAACTTAGCCAAATTCTCATTCTTTCTCCACTCCGCCATGGAACAACCCACCTCCAATTCTCTTCTACATCTCATTGATTCCCTCAATTCCTTCTTCCCATGGCGCTCCATTGACCAATCCCGCTTCCTCTTCACCTTCTTCGCCGCTATTCTAATTTTCCTCTATATAAAACTCAAGCGCCGCCGCCTGCCACTTCCACCAGGTCCCCGAGGCGTTCCACTCCTCGGAAACCTCCCGTTTCTCGACCCTGAACTTCACACATACTTCACCAAACTGGGTGAAAAATACGGCCCAATAGTAAAGCTTCAACTTGGCAAAAAAATCGGTATAATCGTAAATTCACCGTCAGTAGCACGTGAGGTGTTGAAAGACCAAGATGTCACGTTTGCCAATCGCGATGTTCCTCAAGCTGGGAGGGCCGCCACGTACGGTGGTTCCGACATAGTTTGGACACCGTACGGACCTGAGTGGCGAATGTTGAGAAAAGTTTGCGTGTTAAAGATGTTGAGTAACACCACTTTGGACAGCGTTTACGAACTCCGCTATAGAGAGGTGAGAAACACGGTGGCTCACTTGTACCGGCGATCTGGGTCGGCAGTGAACGTGGGAGAGCAGGGGTTTTTGACGATTTTCAACGTGGTTACAAGTATGTTGTGGGGTGGGTCAGTGGAAGGGGAGCAGAGGGATGGTCTTGCGGCAGAGTTTAGAGAGACGGTTTCGGAAATAACAGAGCTATTGGGAAAGCCTAATGTTTCGGATTTTTTTCCGAGTTTGGCCCGTTTTGATCTCCAAGGGATTGAGAAGCAGATGCGTGAGATTGCTCCAAGATTTGATAACATTTTCGAGAAGATGATTGATCAACGATTGAAAATGGGTAATGAAGACGAGGACGGGAATGTCAAGAAAAATGATTTCTTGCAGTTCTTACTTAAAGTCAAAGATGAAGGAGAATCCAAGACTCCTCTCACCATGACCCACCTTAAAGCCTTGCTCATGGATATGGTGGTCGGCGGGACAGACACATCGTCAAATACCGTAGAATTTGCGATGGCAGAAATGATAAAGAACCCAAAAACTCTAAAGAAAGCACAAGAAGAAATCACCGCCGTAGTCGGAGAAGACAACATCGTGGAAGAATCCCACATTCATAGTTTCCCATATCTCAAAGCCGTAATGAAAGAAACTTTACGTTTACACCCAATTCTACCTCTGCTCGTGCCGCATTGCCCAAGCGAGACCACCATCGTCTCCAATTACGCAATTCCAAAGGGCTCTCGAGTGTTCATCAACGTCTGGGCCATTCAGCGAGACCCCAATCAATGGGAAAATCCATTGGTATTTGAACCAGAGAGATTTCTTGAGACCGACAAGTGGGATTTTGGTGGGAGTGATTTCCGTTATTTCCCATTTGGGTCCGGCAGAAGAAACTGTGCAGGGATAGCCATGGCGGAAAGAATGGTAATTTATTTGCTTGCTACGCTTTTGCATTCTTTTGATTGGAAATTGGAAGATGGTGAGAAGATGGAAGTTGAGGAGAAATTTGGGATTGTTATGAAGATGAAGTCGCCTCTCGTTCTCATTCCAACGCCAAGACTATCTGATCCCACTCTGTATCAGTAA 1749 45.68 MIFFSFLEKMIDALLEGKGRAIDSSSCLVSTGFSLCQSSSTLQNLAKFSFFLHSAMEQPTSNSLLHLIDSLNSFFPWRSIDQSRFLFTFFAAILIFLYIKLKRRRLPLPPGPRGVPLLGNLPFLDPELHTYFTKLGEKYGPIVKLQLGKKIGIIVNSPSVAREVLKDQDVTFANRDVPQAGRAATYGGSDIVWTPYGPEWRMLRKVCVLKMLSNTTLDSVYELRYREVRNTVAHLYRRSGSAVNVGEQGFLTIFNVVTSMLWGGSVEGEQRDGLAAEFRETVSEITELLGKPNVSDFFPSLARFDLQGIEKQMREIAPRFDNIFEKMIDQRLKMGNEDEDGNVKKNDFLQFLLKVKDEGESKTPLTMTHLKALLMDMVVGGTDTSSNTVEFAMAEMIKNPKTLKKAQEEITAVVGEDNIVEESHIHSFPYLKAVMKETLRLHPILPLLVPHCPSETTIVSNYAIPKGSRVFINVWAIQRDPNQWENPLVFEPERFLETDKWDFGGSDFRYFPFGSGRRNCAGIAMAERMVIYLLATLLHSFDWKLEDGEKMEVEEKFGIVMKMKSPLVLIPTPRLSDPTLYQ 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4044885 4048741 - Lsi09G003840.1 Lsi09g00384 669997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00384 582 SUPERFAMILY Cytochrome P450 109 574 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 Pfam Cytochrome P450 109 566 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 Gene3D Cytochrome P450 97 569 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 432 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 520 543 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 369 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 389 415 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 510 520 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 252 270 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 473 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 136 155 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS E-class P450 group I signature 160 181 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS P450 superfamily signature 511 520 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS P450 superfamily signature 380 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00384 582 PANTHER OS08G0547900 PROTEIN 83 582 - -
Lsi09g00384 582 PANTHER CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 3-RELATED 83 582 - -
Lsi09g00384 582 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 513 522 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00381 Lsi-Chr9:4013085 Lsi09g00384 Lsi-Chr9:4044885 3.96E-61 dispersed
Lsi09g00382 Lsi-Chr9:4013868 Lsi09g00384 Lsi-Chr9:4044885 2.57E-65 dispersed
Lsi09g00384 Lsi-Chr9:4044885 Lsi01g00721 Lsi-Chr1:5720652 9.84E-113 dispersed
Lsi09g00383 Lsi-Chr9:4037140 Lsi09g00384 Lsi-Chr9:4044885 9.89E-171 tandem
Lsi09g00384 Lsi-Chr9:4044885 Lsi09g00385 Lsi-Chr9:4052485 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00384 - - bhj:120067210 871.307