Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00385 ATGGAACCCACTTCCAATTTCATTCATTCTCTCAATTTCTTTGATCCCAATAATCAAACCCGCTTTCTTCTCACCCTTTTCACCGGTTTTCTACTTCTTTTTTACGTCAAATTTTGGCGGCGGCGCATGCGGCTGCCACCGGGTCCCCCAGGCGTTCCTCTGCTTGGGAATCTGCCGTTTCTAGACCCAGAACTTCACACTTACTTCGCAGAATTGGCCCGAAAATACGGCCCAATTGTAAAGCTTCAACTGGGTGGAAAGATTGGTATAATCGTCAACTCACCCTCTGTAGCACGTGAGGTGTTAAAGGATCACGATATCACTTTCGCCAATCACGACGTTCCTCAGGCTGGCCGAGCCGCCACGTACGGCGGTTATGACATAACCTGGACCCCATACGGACCCGAATGGCGGATATTGAGAAAAGTTTGTACAATCAAGATGCTTAGCAACGCCAGTTTGGACTCTGTTTATGAGCTCCGTCGTACAGAGGTCAGAAACACCGTGGCTAACTTGTACCAGCGAGCTGGGTCGGCGGTAAACGTGGGAGAGCAGGTGTTTTTGACGGTTTTCAATGTGGTTACAAGCATGTTGTGGGGTGGGTCAATGGAAGGGGATAAAATCAGGGACGACCTTGCTGCTGAGTTTAGAGAAGCGATTTCGGACATGACAGGGATATTGGGTAAGCCTAATGTTTCGGACTTTTTTCCGAGCTTGGCCCGTTTTGATTTGCAAGGAATTGAGAAACAAATGCTTAAGCTTGTTCTGAAATTGGACACCATTTTTGAAAAGATGATTGATAAACGATTGAGAATGACGAACGTTGATGAGAGTGCGACGAAAAATGATTTCTTGCAGTACTTACTTAAAATCAAAGATGAAGACGATTCCAAAACTCCTCTCACTATGGTTCAACTTAAAGCCTTGCTCATGGATATGGTGATTGGGGGAACAGACACATCCTCAAACACCATTGAATTTGCAATGGCAGAGATGATGAAGAACCCAAAAGTTTTAGAGAAAGCCAAGGAAGAACTAGCGGCTGTGGTTGGGGAACAGAACATTGTAGAAGAGTCCCATATACAGAGTTTGCCATATCTGAAAGCCATAATGAAAGAAACCTTGCGTCTTCGTCCAATTCTGCCGTTGCTAGTGCCGCGCTGCCCCAGCCACACCACCATCATCTCCAAATACACAATCCCAAAGGGCTCTCGAGTTTTCTTCAACGTTTGGGCCATTCACCGAGACCCCAATCATTGGGAGAATCCATTGGAGTTCGACCCAGAGAGGTTTTTCAATGGTAAATTCGATTTCAGTGGGAGTGATTTTCGTTACTTTCCATTTGGGTCTGGCAGAAGAAATTGTGTAGGGATAGCCATGGCGGAAAGAATGGTAATGTATTTGCTTGCTACGCTTTTGCATTCCTTTGATTGGAAATTGAAAGAAGGTAAGAAGATTGAAATCGAGGAGAAATTTGGGATTGTTTTAAAGATGAAGAAGCCTCTTGTTCTCATTCCAACGCCTAGACTATCAGTCCCCACTCTGTATCAGTAG 1554 45.24 MEPTSNFIHSLNFFDPNNQTRFLLTLFTGFLLLFYVKFWRRRMRLPPGPPGVPLLGNLPFLDPELHTYFAELARKYGPIVKLQLGGKIGIIVNSPSVAREVLKDHDITFANHDVPQAGRAATYGGYDITWTPYGPEWRILRKVCTIKMLSNASLDSVYELRRTEVRNTVANLYQRAGSAVNVGEQVFLTVFNVVTSMLWGGSMEGDKIRDDLAAEFREAISDMTGILGKPNVSDFFPSLARFDLQGIEKQMLKLVLKLDTIFEKMIDKRLRMTNVDESATKNDFLQYLLKIKDEDDSKTPLTMVQLKALLMDMVIGGTDTSSNTIEFAMAEMMKNPKVLEKAKEELAAVVGEQNIVEESHIQSLPYLKAIMKETLRLRPILPLLVPRCPSHTTIISKYTIPKGSRVFFNVWAIHRDPNHWENPLEFDPERFFNGKFDFSGSDFRYFPFGSGRRNCVGIAMAERMVMYLLATLLHSFDWKLKEGKKIEIEEKFGIVLKMKKPLVLIPTPRLSVPTLYQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4052485 4054412 - Lsi09G003850.1 Lsi09g00385 669998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00385 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Lsi09g00385 517 Pfam Cytochrome P450 46 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PANTHER OS08G0547900 PROTEIN 14 517 - -
Lsi09g00385 517 Gene3D Cytochrome P450 36 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00385 517 PANTHER CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 3-RELATED 14 517 - -
Lsi09g00385 517 SUPERFAMILY Cytochrome P450 46 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00383 Lsi-Chr9:4037140 Lsi09g00385 Lsi-Chr9:4052485 8.29E-145 dispersed
Lsi09g00385 Lsi-Chr9:4052485 Lsi09g00350 Lsi-Chr9:3651984 5.05E-118 dispersed
Lsi09g00384 Lsi-Chr9:4044885 Lsi09g00385 Lsi-Chr9:4052485 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00385 - - csv:101213781 838.95