Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00397 ATGTCATCTTCTTCTTCGTCTTCTTCTTCTCCTACTTCTACTACTACTACTCCTACTACTACCACTACGTTATCTCATCAACACCTGCAGCAGCAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAGCTCTGTTATGTCCATTGCAATATTTGTGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTGCGATGTGGACACTGCACGAATTTGCTGCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCTCCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTCATCAATCAATTTGGAACTACTACTAATAATTTTGGAATGTCATCTCGAGGAGTTACTGATGAGCTTCCTAGGCCACCCGTCATCAACAGACCTCCAGAGAAGAGGCAGAGAGTGCCTTCTGCATACAACCGTTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGGGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 735 45.03 MSSSSSSSSSPTSTTTTPTTTTTLSHQHLQQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGTTTNNFGMSSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4170250 4173265 - Lsi09G003970.1 Lsi09g00397 670010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00397 244 PANTHER PROTEIN YABBY 6-RELATED 1 242 IPR006780 GO:0007275
Lsi09g00397 244 Pfam YABBY protein 41 205 IPR006780 GO:0007275
Lsi09g00397 244 MobiDBLite consensus disorder prediction 1 27 - -
Lsi09g00397 244 PANTHER AXIAL REGULATOR YABBY 3 1 242 - -
Lsi09g00397 244 SUPERFAMILY HMG-box 149 198 IPR036910 -
Lsi09g00397 244 MobiDBLite consensus disorder prediction 137 158 - -
Lsi09g00397 244 Gene3D High mobility group box domain 150 219 IPR036910 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi07g01331 Lsi09g00397 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00355 Lsi-Chr4:3547540 Lsi09g00397 Lsi-Chr9:4170250 2.37E-22 dispersed
Lsi04g00561 Lsi-Chr4:5114851 Lsi09g00397 Lsi-Chr9:4170250 3.20E-33 dispersed
Lsi06g00981 Lsi-Chr6:19804966 Lsi09g00397 Lsi-Chr9:4170250 2.53E-23 dispersed
Lsi08g01669 Lsi-Chr8:24447776 Lsi09g00397 Lsi-Chr9:4170250 7.93E-37 dispersed
Lsi09g00397 Lsi-Chr9:4170250 Lsi04g00889 Lsi-Chr4:8841940 5.20E-82 dispersed
Lsi10g01128 Lsi-Chr10:15542074 Lsi09g00397 Lsi-Chr9:4170250 2.56E-40 transposed
Lsi07g01331 Lsi-Chr7:19473302 Lsi09g00397 Lsi-Chr9:4170250 2.04E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25876 PF04690 YABBY 6.90E-71 CL0114 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00397 K25796 - csv:101214748 428.328