Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00397 ATGTCATCTTCTTCTTCGTCTTCTTCTTCTCCTACTTCTACTACTACTACTCCTACTACTACCACTACGTTATCTCATCAACACCTGCAGCAGCAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAGCTCTGTTATGTCCATTGCAATATTTGTGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTGCGATGTGGACACTGCACGAATTTGCTGCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCTCCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTCATCAATCAATTTGGAACTACTACTAATAATTTTGGAATGTCATCTCGAGGAGTTACTGATGAGCTTCCTAGGCCACCCGTCATCAACAGACCTCCAGAGAAGAGGCAGAGAGTGCCTTCTGCATACAACCGTTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGGGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 735 45.03 MSSSSSSSSSPTSTTTTPTTTTTLSHQHLQQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGTTTNNFGMSSRGVTDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4170250 4173265 - Lsi09G003970.1 Lsi09g00397 670010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00397 244 PANTHER PROTEIN YABBY 6-RELATED 1 242 IPR006780 GO:0007275
Lsi09g00397 244 Pfam YABBY protein 41 205 IPR006780 GO:0007275
Lsi09g00397 244 MobiDBLite consensus disorder prediction 1 27 - -
Lsi09g00397 244 PANTHER AXIAL REGULATOR YABBY 3 1 242 - -
Lsi09g00397 244 SUPERFAMILY HMG-box 149 198 IPR036910 -
Lsi09g00397 244 MobiDBLite consensus disorder prediction 137 158 - -
Lsi09g00397 244 Gene3D High mobility group box domain 150 219 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00397 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101214748 428.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi07g01331 Lsi09g00397 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00355 Lsi-Chr4:3547540 Lsi09g00397 Lsi-Chr9:4170250 2.37E-22 dispersed
Lsi04g00561 Lsi-Chr4:5114851 Lsi09g00397 Lsi-Chr9:4170250 3.20E-33 dispersed
Lsi06g00981 Lsi-Chr6:19804966 Lsi09g00397 Lsi-Chr9:4170250 2.53E-23 dispersed
Lsi08g01669 Lsi-Chr8:24447776 Lsi09g00397 Lsi-Chr9:4170250 7.93E-37 dispersed
Lsi09g00397 Lsi-Chr9:4170250 Lsi04g00889 Lsi-Chr4:8841940 5.20E-82 dispersed
Lsi10g01128 Lsi-Chr10:15542074 Lsi09g00397 Lsi-Chr9:4170250 2.56E-40 transposed
Lsi07g01331 Lsi-Chr7:19473302 Lsi09g00397 Lsi-Chr9:4170250 2.04E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g495 Blo02g01054 . Bda06g00039 Bda08g00564 Bpe05g00592 Bpe07g00159 . Bma14g00033 Cmo06g00784 . . Cma15g01149 . Car15g01044 . . . . . . . . . . Cla10g00285 Cam10g0296 Cec10g0303 Cco10g0299 Clacu10g0295 Cmu10g1134 Cre10g0542 . . Cone6ag0698 Cone9ag0698 Lsi07g01331 Csa05g00395 Chy09g01118 Cme06g02614 Blo03g00407 . Bda07g00010 . . Bpe11g00259 . . . . Cmo15g01209 Cma06g00763 . Car06g00681 . Cpe08g00754 Cpe13g00219 Bhi12g00406 . . . . . Lcy12g1797 Cla01g00368 Cam01g0388 Cec01g0381 Cco01g0399 Clacu01g0387 Cmu01g0368 Cre09g2142 Lsi09g00397 Csa03g00304 Chy06g02018 Cme09g01648
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00397 CCT 84 244 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 1.5e-39 159.5
Lsi09g00397 CCT 40 234 C2C2-YABBY Transcription Factor Family AT1G08465 50.5 1.8e-41 166.0
Lsi10g01128 . 1 144 C2C2-YABBY Transcription Factor Family AT1G08465 58.1 2.2e-39 159.1
Lsi09g00397 CCT 51 243 C2C2-YABBY Transcription Factor Family AT4G00180 55.6 1.7e-48 189.5
Lsi09g00397 CCT 42 206 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.2e-41 164.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25876 PF04690 YABBY 6.90E-71 CL0114 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00397 Lsi_Chr09 FPKM 0.771536 1.401897 6.289826 8.922729 8.261056 6.345588 6.414561 6.64107 9.307287 7.867826