Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00399 ATGGCTCGGTTTCCTTACTTATCGGTTTTTCTCCTTCCAATTTGCCTGTTTGTGACCCTCTCTTCGGCCGCAGATCCGTTCGCTTTCTTTGATTTTGAAGTCTCCTACATCACTGCTTCTCCTCTGGGAGTTCCTCAACAGGTTATTGCTATAAATGGGAAGTTTCCTGGTCCTACTATCAATGTGACTACTAACAACAATGTTGTTATCAATGTCAAGAACAAGTTGGATGAGAGCATGCTCATGCATTGGTCTGGAGTTCAACAGCGGCGAAGTTCATGGCAAGATGGAGTCCTAGGAACAAATTGTCCAATTCCTCCCAAGTGGAACTGGACTTACCAGTTTCAAGTTAAGGATCAGATAGGGAGCTTCTTTTACTTTCCATCACTCCATTTCCAGAGAGCGTCGGGTGGATTTGGCGGCATTATTATTAACAATAGGCCTATAATCCCCATTCCTTTTGCAACCCCAGATGGGGACATTACAATTTTGATCGGTGATTGGTACACCCGGAATCACACGGTTAGTGCTCTGAGAAAATCCCTTGATGATGGGAAGGATCTTGGAATGCCGCATGGTGTTCTCATTAATGGCAAAGGCCCCTACAGATATAATGACACTCTAGTCCCTGACGGTATTGACCACGAAACAATTGAAGTTCATCCAGGTAACAATGATACCTCAACGAAGTTGAAATTCTACTTCAATTGCACAAGTGGCTTGCTCCTGACTGTGAACAGAGCCCAATCAACTACTAAGCATCATCTAGGCTCTAGCCTGAGACAATCCCTAAGCCTATTTTGTTTGTGTCCATCTAATGTTGGCTCCACACACGGGAAAACGTATCGGATTCGTGTACACAATGTTGGAATATCTACTAGTCTGAATTTCAGGATCCAAAACCACAATCTTCTTTTAGCAGAAACTGAGGGGTCGTATACAGTGCAACAGAATTATACTAGCTTAGATATACATGTAGGACAGTCGTATTCATTTTTGGTAACCATGGATCAGAATGCGAGCACTGATTATTACATTGTAGCCAGTGCTCGGTTTGTCAACGAATCTCTTTGGAAAAGAGTTACAGGTGTTGCTATTTTGCATTACTCTAATTCCAAAGGAAAGGCAGCTGGTCCCCTTCCAGAAGCACCAAATGATGAATTTGATAAAACTTTCTCAATGAACCAGGCAAGATCAATCAGGTTTGTCCAAAAATCACAATCACAAAAGCAAACTTGTAAATGGAATGTATCCGCTAGTGGTGCTCGTCCCAATCCTCAAGGATCATTCAGATATGGTTCAATTAATGTAACTGATGTTTACGTCTTGAAAAATAAACCTCCTGTGTTGATCAACGGTAAAATGCGAACAACACTAAGTGGAATCTCGTTTGTTAATCCATCCACACCAATCAGATTGGCTGACCAATTCAAGTTAAAGGGTGTTTATAAGCTCGACTTCCCCACCAGGCCGCTTACAGGACCACCAAAGGCAGAGACATCAGTGATTAATGGAACATATAGAGGGTTTATGGAGGTTATACTGCAGAATAACGACACCAAGATGCAGAGTTATCACATGAATGGATATGCCGTCTTTGTCGTGGGGATGGACTATGGCGAGTGGACCGAGAATAGCAGGGGCACATACAATAAATGGGATGGAATAGCTCGCTCAACAATTCAGGTCTATCCTGGAGCATGGACTGCCATCTTGATATCTCTCGACAACGTGGGAGTTTGGAACATCAGGACAGAAAATCTTGACTCGTGGTATCTTGGGCAAGAGACGTATGTTCGGGTTGTCAATCCTGAGGCTACTAACAAAACTGAACTGCCTATGCCAGACAATGCTCTCTTTTGTGGTCAGCTTGGTAAATTACAGAAGCCACAAGATATCTCTTCTGCAATTTCCATCACTGGCGATAGATTGAAGATGTTATTCACTCTGCTGATGATCATCTCCACTGTAATCTCTGCTTTGCACTAA 1989 42.84 MARFPYLSVFLLPICLFVTLSSAADPFAFFDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVVINVKNKLDESMLMHWSGVQQRRSSWQDGVLGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLHFQRASGGFGGIIINNRPIIPIPFATPDGDITILIGDWYTRNHTVSALRKSLDDGKDLGMPHGVLINGKGPYRYNDTLVPDGIDHETIEVHPGNNDTSTKLKFYFNCTSGLLLTVNRAQSTTKHHLGSSLRQSLSLFCLCPSNVGSTHGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESLWKRVTGVAILHYSNSKGKAAGPLPEAPNDEFDKTFSMNQARSIRFVQKSQSQKQTCKWNVSASGARPNPQGSFRYGSINVTDVYVLKNKPPVLINGKMRTTLSGISFVNPSTPIRLADQFKLKGVYKLDFPTRPLTGPPKAETSVINGTYRGFMEVILQNNDTKMQSYHMNGYAVFVVGMDYGEWTENSRGTYNKWDGIARSTIQVYPGAWTAILISLDNVGVWNIRTENLDSWYLGQETYVRVVNPEATNKTELPMPDNALFCGQLGKLQKPQDISSAISITGDRLKMLFTLLMIISTVISALH 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4204472 4209101 - Lsi09G003990.1 Lsi09g00399 670012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00399 662 SUPERFAMILY Cupredoxins 450 623 IPR008972 -
Lsi09g00399 662 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 12 224 - -
Lsi09g00399 662 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 272 633 - -
Lsi09g00399 662 SUPERFAMILY Cupredoxins 23 173 IPR008972 -
Lsi09g00399 662 Gene3D - 21 146 IPR008972 -
Lsi09g00399 662 Gene3D - 434 631 IPR008972 -
Lsi09g00399 662 SUPERFAMILY Cupredoxins 154 390 IPR008972 -
Lsi09g00399 662 Pfam Multicopper oxidase 471 604 IPR011706 GO:0005507|GO:0016491
Lsi09g00399 662 Pfam Multicopper oxidase 277 371 IPR001117 -
Lsi09g00399 662 Pfam Multicopper oxidase 160 224 IPR001117 -
Lsi09g00399 662 PANTHER MULTI-COPPER OXIDASE 272 633 IPR045087 -
Lsi09g00399 662 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507
Lsi09g00399 662 PANTHER MULTI-COPPER OXIDASE 12 224 IPR045087 -
Lsi09g00399 662 Gene3D - 158 409 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00399 - - - pvy:116126232 943.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02188 Lsi-Chr2:28365599 Lsi09g00399 Lsi-Chr9:4204472 1.93E-105 dispersed
Lsi05g01323 Lsi-Chr5:21001833 Lsi09g00399 Lsi-Chr9:4204472 0 dispersed
Lsi09g00399 Lsi-Chr9:4204472 Lsi09g00600 Lsi-Chr9:6512651 0 dispersed
Lsi09g00398 Lsi-Chr9:4191158 Lsi09g00399 Lsi-Chr9:4204472 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g496 . . . . . . Bma07g01605 . . . . Cma15g01148 . Car15g01043 . . . . . . . . . . . . . . . . . . . . . . Csa05g00396 Chy09g01117 . . Blo19g00222 . Bda09g00089 Bpe08g01440 . . . . . Cmo15g01208 . . . . . Cpe13g00220 . . . . . . . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 Lsi09g00399 . . Cme09g01647
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000359 4 3 4 4 4 4 5 4 4 4 5 4 5 4 4 5 4 6 5 4 4 4 4 4 4 5 4 8 5 2 130
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00399 Lsi_Chr09 FPKM 2.803231 3.177032 3.98359 3.663095 5.968307 6.679042 5.321951 2.834948 2.719399 3.127077