Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00401 ATGTCACTCTCTTTGCAATCTCCGCCGTCTGCAACCATTCCGCCGTCGCCGTCGTCTTCTTCCTTTCTTCAGAAAAAATTGGGGTTCTCAGCTGGATTACTCAAACCCTCCAATCTAATTTCCCATTCTCGTAGATCTCTTCCTTTCATTTCTGCTTCCTCCGGCTTCTCCTCTTCCCTCGACACTGGTTTGACATCTGAGTTAGACGCTGTTTCTAGCTTCAGTGAGATCGTTCCCGACACCGTCGTTTTTGACGATTTCGAGAGGTTTCCTCCTACTGCTGCTACCGTCAGCTCTTCTCTCCTTCTGGGCATATGTGGCCTTCCTGATACCATATTTAGAAATGCGGTTGATATGGCATTGGCTGATGCTGAATGTTTTGGGATAGAGAATCCCGAATTGAAATATTCCTGCATTTTTAACAAGGCTCTAGTAAATGTTGGTGGTGATTTGGCAAAACTAGTTCCTGGACGTGTTTCGACTGAGGTGGATGCACGTGTTGCATATGACACATATGGCATTATCAGAAAGGTGCATGACCTGTTGAAATTGTACAATGAATTCAATGTTCCTCCAGAGCGGTTGCTATTCAAGATTCCATCAACTTGGCAGGGAATTGAGGCCTCAAGATTGTTGGAATCTGAGGGAATACAGACACATTTGACTTTTGTATACAGCTTTGCTCAAGCAGCAGCTGCAGCTCAAGCTGGTGCCTCTGTTATCCAGATTTTTGTTGGTCGCTTACGTGATTGGGCTCGCAATCACTCTGGTGACCCTGAAATAGAAGCTGCTCTTAGAAGAGGAGAGGATCCTGGGTTGGCTTTGGTGACAAAGGCTTACAACTACATTCACAAATATGGATACAAATCAAAGTTGATGGCGGCAGCTGTTAGGAATAAGCAAGATTTGTTTAGTCTTCTGGGCGTCGATTACATCATTGCTCCATTGAAGGTATTGCAGTCCCTTAAAGAATCAGTTACCACTCCGGATGATAAGTACTCTTTTATTAGGAAACTCTCTCCGCAGTCCGCAGCTAATTACATTTTCAGTGAGGAAGAGGTAAAAAATTGGGACCAATTAAGCCTTGCATCAGGAATGGGGCCTGCAGCTTTGCAGCTGCTTGCTAATGGATTGGAAGGTTATGCTGACCAAACAAAGCGAGTTGAGGAGCTTTTTGGGAAGATTTGGCCACCCCCAAATGTATGA 1206 44.86 MSLSLQSPPSATIPPSPSSSSFLQKKLGFSAGLLKPSNLISHSRRSLPFISASSGFSSSLDTGLTSELDAVSSFSEIVPDTVVFDDFERFPPTAATVSSSLLLGICGLPDTIFRNAVDMALADAECFGIENPELKYSCIFNKALVNVGGDLAKLVPGRVSTEVDARVAYDTYGIIRKVHDLLKLYNEFNVPPERLLFKIPSTWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIEAALRRGEDPGLALVTKAYNYIHKYGYKSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESVTTPDDKYSFIRKLSPQSAANYIFSEEEVKNWDQLSLASGMGPAALQLLANGLEGYADQTKRVEELFGKIWPPPNV 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4229949 4234394 - Lsi09G004010.1 Lsi09g00401 670014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00401 401 PANTHER ALDOLASE SUPERFAMILY PROTEIN 1 401 - -
Lsi09g00401 401 SUPERFAMILY Aldolase 65 396 - -
Lsi09g00401 401 CDD Transaldolase_TalAB 66 392 IPR004730 GO:0004801|GO:0005737|GO:0006098
Lsi09g00401 401 PANTHER TRANSALDOLASE 1 401 IPR001585 GO:0005975
Lsi09g00401 401 Gene3D Aldolase class I 65 395 IPR013785 -
Lsi09g00401 401 Pfam Transaldolase/Fructose-6-phosphate aldolase 112 340 IPR001585 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00401 K00616 E2.2.1.2, talA, talB; transaldolase [EC:2.2.1.2] - csv:101215470 694.886
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g498 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00398 Chy09g01115 . . Blo19g00230 . Bda09g00091 Bpe08g01438 . . . . . . . . . . . . Bhi12g00411 . . . . . Lcy12g1800 Cla01g00372 Cam01g0391 Cec01g0383 Cco01g0403 Clacu01g0391 Cmu01g0372 Cre09g2139 Lsi09g00401 . . Cme09g01645
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012684 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 2 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00401 Lsi_Chr09 FPKM 59.748592 68.920128 72.06765 77.140991 48.630573 45.455387 49.392265 112.4478 104.496582 113.276764