Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00403 ATGGCCAATACATCTGGGTTCTTTGCAACATCAGTCCCGAGTCTAAGGGCGAGGAATTTGCCATTAGGAGGCAGTTTTCGATCTGGGTTTAGATCATCTGATGGAATATCTAAAGTAATATTCTGTTCTAGTTCTCTTGGGGCAGAGAAGGTTTCTTCTGGAGCTTCTCCTTCTGAATCTCGAGTGCCCAGGATCGTCACTAGAGGCTGCAAGCTAGTTGGGTGTGGTTCAGCTGTACCAAGTCTTCAGATTTCAAATGATGATCTTGCAAAATTGGTTGATACAAATGATGAATGGATATCTGTTCGCACTGGGATTCGCAATCGAAGGGTGATTGCAGGTGTGTGCTATCTCATGGAGCAAACAGTAGGAGTCTACAACCAATGA 387 44.44 MANTSGFFATSVPSLRARNLPLGGSFRSGFRSSDGISKVIFCSSSLGAEKVSSGASPSESRVPRIVTRGCKLVGCGSAVPSLQISNDDLAKLVDTNDEWISVRTGIRNRRVIAGVCYLMEQTVGVYNQ 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4242194 4243907 - Lsi09G004030.1 Lsi09g00403 670016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00403 128 Gene3D - 55 121 IPR016039 GO:0016746
Lsi09g00403 128 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 1 116 - -
Lsi09g00403 128 PANTHER 3-OXOACYL-(ACYL CARRIER) SYNTHASE III 1 116 - -
Lsi09g00403 128 SUPERFAMILY Thiolase-like 67 115 IPR016039 GO:0016746
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00403 K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] - csv:101215700 207.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g502 . . . . . . Bma07g01602 . . . . Cma15g01146 . Car15g01041 . . . . . . . . . . . . . . . . . . Cone12ag0367 Cone6ag0694 . . Csa05g00399 Chy09g01114 . . Blo19g00231 . Bda09g00092 Bpe08g01437 . . . . . Cmo15g01206 . . . . . Cpe13g00222 Bhi12g00412 . . Lac11g2255 Hepe06g1655 . Lcy12g1801 . . . . . . . Lsi09g00403 . . Cme09g01644
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0028551 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00403 Lsi_Chr09 FPKM 7.316934 7.569067 15.328386 16.440823 10.203396 6.610255 7.768736 35.184441 35.611515 33.927189