Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00404 ATGATTTACAAGGTGAGTATGGTGAGAGAAGGAGAGAATAATTCAGTTCCAGAATGGCTTGAAATTCTTTTGGGAGAGAAGTTCTTTACTCCATGTTCACTTCATAAGTCTACTAAGAAGAATGACAAGACTTTCTTTTGCTTGTTCTGCCGCTCTGCTATTTGCTTCTCTTGCTTCTCTTCTCATCGCACTCATACTCTTCTCCAGATAAGAAGATATGTGTATCATGAAGTTATACGACTAGGAGATGCTGAGAAGCTGTTGAATTGTTCTCTTATACAACCATACACAACAAACAGAGCAAAAGTGGTGTTTCTAAAACATAGAAGAAGGGGAAAGAGAAAAGGTTTGAGAGGAGGAGGAGGATCCGCTCATTTCTGCATCACATGCTTTCGCAACCTTCAATATCCATATCTCTTTTGCTCTCTTTCATGCAAGATCAATCAAAAGGTGAATGACAAAATTGAAATAATCAACAAACAAAAAAGGAATTATGATCATTTTCCACCGCGAAGCACAACACAAACCCAAACCCCAACCTCCGTTCTGGACGGGGATTTTCCCTCCGCTGTCTCAAAAACCGCCGCCGCCATTAAGTTAGTCAAGAAGAATCGTAACTGTGTGAAATCGTTAGCGGCGGTTCTGTACCGGCCGAGATGCTTTCCCATCTCCGATATTGCCACCGCCGCGAACCGCCGAAAGGGCGTTCCTCAAAGATCGCCGTTAACCTGA 732 42.76 MIYKVSMVREGENNSVPEWLEILLGEKFFTPCSLHKSTKKNDKTFFCLFCRSAICFSCFSSHRTHTLLQIRRYVYHEVIRLGDAEKLLNCSLIQPYTTNRAKVVFLKHRRRGKRKGLRGGGGSAHFCITCFRNLQYPYLFCSLSCKINQKVNDKIEIINKQKRNYDHFPPRSTTQTQTPTSVLDGDFPSAVSKTAAAIKLVKKNRNCVKSLAAVLYRPRCFPISDIATAANRRKGVPQRSPLT 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4257550 4261465 + Lsi09G004040.1 Lsi09g00404 670017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00404 243 PANTHER BNAA09G38660D PROTEIN 14 243 - -
Lsi09g00404 243 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 14 243 - -
Lsi09g00404 243 ProSiteProfiles Zinc finger B-box type profile. 32 81 IPR000315 GO:0008270
Lsi09g00404 243 Pfam PLATZ transcription factor 71 147 IPR006734 -
Lsi09g00404 243 SUPERFAMILY B-box zinc-binding domain 31 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00404 - - - csv:101221644 375.555
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00404 Lsi-Chr9:4257550 Lsi11g00393 Lsi-Chr11:4086168 3.45E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g503 Blo02g01052 . . Bda08g00566 Bpe05g00591 Bpe07g00162 . . . . . Cma15g01144 . . . . . Bhi11g00028 Tan01g2199 . . . Mch10g1668 . . . . . . . . . . Cone6ag0693 Cone9ag0695 . Csa05g00400 Chy09g01113 . . Blo19g00232 . Bda09g00093 Bpe08g01436 . Bma05g00773 Bma12g00153 . . . . . . Car16g01102 . . Bhi12g00413 . . Lac11g2257 Hepe06g1656 . Lcy12g1803 Cla01g00373 Cam01g0392 Cec01g0384 Cco01g0404 Clacu01g0392 Cmu01g0373 Cre09g2138 Lsi09g00404 . . Cme09g01643
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006180 3 1 2 4 3 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25877 PF04640 PLATZ 5.90E-23 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00404 Lsi_Chr09 FPKM 0.664012 0.946222 4.567924 4.935911 1.340291 0.0 0.0 6.754311 5.812769 13.147882