Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00408 ATGAAGGTCAAGGAAATGCATCCTCTGTGTTGCATCTCAGTCGACACTTTCGGAATCGGAGCATGTGGTGGCGATGAAGATAAGTCCAAGGATGAGGCTGCGGCTTTGGCTCTCTCTAGGACCAAGAGCATGCCGGCGAGTTTGGCGGCCTTTTCCGATGGATCTGATGGGAATGTCATCAAACGGCCACCGGCCGGATCCAAATCCGCGGTCGCCGGAGTTCTTCACAAATGGACCAATTACGGCAAAGGGTGGAGATCGAGGTGGTTCTTCCTTCGAAATGGGGTTTTATCCTATGCGAAGATTCGCCGACCGGAGAATCTGAACCTTCTTGCTCCATACGACGATGTTCGATTGATCGGAGATGTTTCGAGCAATCGGATTCCGAGGGGAGATGAGAAAGCTGGAGGGAGACGAAAGCATCAGAAAGCGGTGGGAGTGGTTCATTTGAAGATTGGATCATTTCGAGAGAGCAAGTCGGATGATAGGAGGTTTTATATATCCACTGCTACGAAGACTCTTCATTTGAGAACTAATTCAAAGAGTGATCGAGGGGCTTGGATTCAAGCTTTGGCTTCAGATCGCAGCATATCTCCTCAAGCATCACTGAATTATAATCTCTCCCCGGTGCCGAGTGATTTATCAGTGTCGACGGACAGACTGAAGAATCGTTTAATTGAAGAAGGAATCAATGAAACTCTTGTAAAGGATTGCGAACAGATAATGCTCGCCGAATTCTCCGAAATTCAAGGGCAGCTTCAAGTTCTATGTGAAGAACGATATAACCTGCTTGACACAATTAGGCAGTTGGAGGCTGCTAATTTTGAAGCTGAAGCTTCTGGAACGAATGATGGCGAATTCCAACTTACGAAACATGATCTTTCCTCTGAAGAACGTGGAAAATATAGTGAATGCAGCACCACGGAATCATCGGATGACATCGAGAAACCAGAGTTTGAGGAGGAGGTTTCAGACGAAGACGAAGTGTCCTTTTACGATACCAGGGATTCTTTCTCTGAAAATTCTGTCGATGATGGAGTTGATAGCAAGGCTGAAAATTGTCATTATGATGATGCTGAGACAATGCCTGCTAAAGTGCAGTTACAGAACAGATATTCACACATTCAAAGGCGAAAACGGCTTCCCGATCCGGTGGAGAAGGAGAAACGAGTTAGCCTTTGGTCAATGATCAAAGACAATGTGGGAAAAGATCTGACAAGAGTATGCCTCCCTGTTTACTTCAACGAGCCCATATCATCACTGCAGAAATGCTGTGAAGACATGGAGTATTCGTATCTATTAGATCAGGCATATGAGCAAGGAAAGCAGGGAAATAGTCTACAAAGGATTCTGAATGTTGCAGCATTCGCGGTTTCGGGGTACGCTTCTTCCGAAGGCAGACATTGCAAACCATTCAATCCCCTGTTGGGGGAAACTTATGAAGCGGATTTTCCAGAGAAAGGGATTCGGTTTTTCTCTGAGAAGGTGAGCCACCATCCAACTCTGATAGCATGCCATTGTGAAGGGAGAGGGTGGAAGTTTTGGGGAGATAGCAACCTTCAGTCCAAATTCTCGGGAAGGTCAATTCAGCTGGACCCTCTTGGAGTTCTCACACTCGAGTTTGACGACGGTGAAATCTTCCAGTGGAGCAAGGTAACAACCAATATTTACAATCTCATCCTCGGGAAAGTATATTGTGATCACCATGGAACGATGCACATACGTGGTAATAGGGACTATTCTTGCAACCTCAAGTTCAAAGAGCAATCTTTTCTCGACCGAAATCCTCGTCAGGTTCATGGGTACGTCGAAGACGCTACTGGGGAAAAAGTTGCAACATTGTTTGGGAAGTGGGACGACAGCCTATATTATGTAAATGGTCATGAGAATGTAAATTCAAAGAGTTGTACTGATGGTACTTTGCTGTGGAAAAGCAGTGAACCACCACTGAATCTGACTCGATACAACTTGACTTCTTTCGCAATTACTTTGAATGAGCTGACACCAGGGCTCAAGGAGATGCTCCCTCCCACGGATTCCAGACTCCGACCAGATCAACGGCATCTGGAAAATGGCGAGTACGATAAAGCCAATGCAGAGAAGCTACGGTTAGAACAAAGGCAAAGAATTTCAAGGAAGTTACAAGAAAATGGTTGGAAGCCGAGATGGTTTCAGAGAGAGGGTGAAGACGGTCCCTTTCGGTACGTCGGGGGATATTGGGAAGCAAGGGAAGAGAGGAAATGGGACGATTGCGCAGATATATTTGGGGAATTGAATGAGGAGGTTATGGAGAATTAG 2298 45.91 MKVKEMHPLCCISVDTFGIGACGGDEDKSKDEAAALALSRTKSMPASLAAFSDGSDGNVIKRPPAGSKSAVAGVLHKWTNYGKGWRSRWFFLRNGVLSYAKIRRPENLNLLAPYDDVRLIGDVSSNRIPRGDEKAGGRRKHQKAVGVVHLKIGSFRESKSDDRRFYISTATKTLHLRTNSKSDRGAWIQALASDRSISPQASLNYNLSPVPSDLSVSTDRLKNRLIEEGINETLVKDCEQIMLAEFSEIQGQLQVLCEERYNLLDTIRQLEAANFEAEASGTNDGEFQLTKHDLSSEERGKYSECSTTESSDDIEKPEFEEEVSDEDEVSFYDTRDSFSENSVDDGVDSKAENCHYDDAETMPAKVQLQNRYSHIQRRKRLPDPVEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDMEYSYLLDQAYEQGKQGNSLQRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTLIACHCEGRGWKFWGDSNLQSKFSGRSIQLDPLGVLTLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNRDYSCNLKFKEQSFLDRNPRQVHGYVEDATGEKVATLFGKWDDSLYYVNGHENVNSKSCTDGTLLWKSSEPPLNLTRYNLTSFAITLNELTPGLKEMLPPTDSRLRPDQRHLENGEYDKANAEKLRLEQRQRISRKLQENGWKPRWFQREGEDGPFRYVGGYWEAREERKWDDCADIFGELNEEVMEN 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4341826 4352295 + Lsi09G004080.1 Lsi09g00408 670021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00408 765 Pfam Pleckstrin homology domain 76 192 - -
Lsi09g00408 765 Gene3D - 686 760 - -
Lsi09g00408 765 MobiDBLite consensus disorder prediction 293 313 - -
Lsi09g00408 765 ProSiteProfiles PH domain profile. 68 196 IPR001849 -
Lsi09g00408 765 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 759 - -
Lsi09g00408 765 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 759 IPR000648 GO:0008289
Lsi09g00408 765 Gene3D - 478 648 - -
Lsi09g00408 765 SUPERFAMILY PH domain-like 67 192 - -
Lsi09g00408 765 Gene3D - 64 198 IPR011993 -
Lsi09g00408 765 SUPERFAMILY Oxysterol-binding protein-like 387 761 IPR037239 -
Lsi09g00408 765 SMART PH_update 69 198 IPR001849 -
Lsi09g00408 765 MobiDBLite consensus disorder prediction 293 327 - -
Lsi09g00408 765 Pfam Oxysterol-binding protein 392 744 IPR000648 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00408 K20456 OSBP; oxysterol-binding protein 1 - csv:101216432 1420.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01348 Lsi-Chr2:18063344 Lsi09g00408 Lsi-Chr9:4341826 1.19E-44 dispersed
Lsi04g00633 Lsi-Chr4:5805054 Lsi09g00408 Lsi-Chr9:4341826 0 dispersed
Lsi06g01198 Lsi-Chr6:22332461 Lsi09g00408 Lsi-Chr9:4341826 9.12E-10 dispersed
Lsi11g00786 Lsi-Chr11:9122639 Lsi09g00408 Lsi-Chr9:4341826 3.30E-06 dispersed
Lsi09g01051 Lsi-Chr9:15870577 Lsi09g00408 Lsi-Chr9:4341826 1.15E-176 transposed
Lsi07g01319 Lsi-Chr7:19321813 Lsi09g00408 Lsi-Chr9:4341826 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00408 Lsi_Chr09 FPKM 0.0 0.0 0.0 0.0 3.349166 0.0 1.468133 3.767929 3.230531 2.881285