Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00416 ATGGATATGGTTTTCAAGACTTGTAATTTCTTTCATCTTGCTTTCTTCTTCTTACTCAATTTTCTCTTCTTTACATTTGTGAATTCTACTTGCTCATGTCCTATTGAATCCACCACTTGCTCATGTCCTTCTCAACCAGCTAGTTCAAAATCAAGTTATTATGAGAAACCAAAACCTATTCCTCCTCCTCTAACTCCATATCAACCCATCAAGATTGATGAAAAATGTCCAAGAGATGCATTAAAGATAGGCATTTGTGCAAAGTTGCTTAATAATGATTTACTTGAAGTGATTCTTGGCAAACCACCTATAACTCCATGTTGCTCTCTTCTTGAAGGTCTTGCTGATCTTGAAGTTGCTGTTTGCCTTTGTGCTGTTCTTAAGGCGTGTGTCTTAGGTGTTGACCTTAACAATATACCAATTTCACTCAATTTGCTTGCTGGTAACTGTGGTAGACATATTCCAAGAAGCTTCCAATGTTCTTGA 486 36.83 MDMVFKTCNFFHLAFFFLLNFLFFTFVNSTCSCPIESTTCSCPSQPASSKSSYYEKPKPIPPPLTPYQPIKIDEKCPRDALKIGICAKLLNNDLLEVILGKPPITPCCSLLEGLADLEVAVCLCAVLKACVLGVDLNNIPISLNLLAGNCGRHIPRSFQCS 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4439825 4441653 - Lsi09G004160.1 Lsi09g00416 670029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00416 161 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 78 160 IPR036312 -
Lsi09g00416 161 Pfam Hydrophobic seed protein 76 161 IPR027923 -
Lsi09g00416 161 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Lsi09g00416 161 SMART aai_6 76 160 IPR016140 -
Lsi09g00416 161 Gene3D - 75 161 IPR036312 -
Lsi09g00416 161 CDD HPS_like 75 160 IPR027923 -
Lsi09g00416 161 PANTHER HYPRP2 10 160 - -
Lsi09g00416 161 PANTHER - 10 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00416 - - - qsu:112010755 123.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi07g01312 Lsi09g00416 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00414 Lsi-Chr9:4422721 Lsi09g00416 Lsi-Chr9:4439825 1.43E-31 dispersed
Lsi09g00416 Lsi-Chr9:4439825 Lsi09g00412 Lsi-Chr9:4410095 2.47E-29 dispersed
Lsi09g00415 Lsi-Chr9:4434519 Lsi09g00416 Lsi-Chr9:4439825 1.31E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g518 Blo02g01047 . . . . . Bma07g01600 . Cmo06g00795 . . Cma15g01133 . . Sed03g1246 . . Bhi11g00206 Tan01g2018 Cmetu06g2397 . . Mch10g1550 . Cla10g00267 Cam10g0275 Cec10g0283 Cco10g0279 Clacu10g0277 Cmu10g1117 Cre10g0526 . . . . Lsi07g01312 Csa05g00414 Chy09g01096 Cme06g02585 . Blo19g00256 . . Bpe08g01433 . . Bma12g00161 . . Cmo15g01192 Cma06g00775 . . . . . Bhi12g00431 . . Lac11g2276 . . Lcy12g1820 Cla01g00386 Cam01g0403 Cec01g0395 Cco01g0416 Clacu01g0404 Cmu01g0385 Cre09g2123 Lsi09g00416 Csa03g00286 Chy06g02037 Cme09g01625
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012653 0 0 0 0 0 1 0 1 0 0 1 1 0 0 0 0 1 0 0 1 0 1 0 4 5 1 0 0 4 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00416 Lsi_Chr09 FPKM 6.809096 8.045523 20.816143 21.441256 5.715452 6.400177 6.290844 58.967995 52.985641 57.052193