Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00420 ATGAGTACGGGAGAACTCCTCAGCATCGAACCTCTCGAGCTCAAGTTTCCCTTCGAATTGAAGAAGCAGATCTCTTGTTCCCTTCAATTGTCTAACAAGACCGAGAGCTACGTTGCATTCAAGGTTAAAACTACGAACCCTAAAAAGTACTGCGTTCGCCCAAACACTGGAATTGTCTCGCCACGGTCAACATGCGACGTTATAGTCACCATGCAAGCCCAGAAAGAGGCTCCTGCTGATATGCAATGCAAAGACAAATTCCTTCTTCAGAGTGTTAAAACAGTTGATGGCGCAACGGCAAAGGATATCAACGCAGAAATGTTCAATAAGGAGGCTGGGCATGTGGTTGAGGAATTCAAATTGAAAGTCGTTTATGTTTCTCCACCTCAACCACCTTCTCCAGTACCAGAAGGTTCTGAAGAAGGGTCCTCTCCAAGAGGTTCTCTTTCAGAGAATGGAAACTTCAATGATGCTGACTTGAATACTGCTACAAGGGGATATGTTGAACGGTCGGAACCGCAGGATAAATCTGCAGAGGCTAGAGCCCTCATAGCGAAACTCACGGAGGAAAAGAATAATGCCATGCAACAGAATAACAAACTTCGTCAGGAATTGGAACTCTTAAAGCATGATGGCAGGAAAAATGCCGGTGGCATCTCGTTCCTGTTCGTCATATTAGTTGGATTGATCGGAATCTTCTTTGGCTATATTATTAAGAAGACTTGA 726 44.35 MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTESYVAFKVKTTNPKKYCVRPNTGIVSPRSTCDVIVTMQAQKEAPADMQCKDKFLLQSVKTVDGATAKDINAEMFNKEAGHVVEEFKLKVVYVSPPQPPSPVPEGSEEGSSPRGSLSENGNFNDADLNTATRGYVERSEPQDKSAEARALIAKLTEEKNNAMQQNNKLRQELELLKHDGRKNAGGISFLFVILVGLIGIFFGYIIKKT 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4466804 4469963 - Lsi09G004200.1 Lsi09g00420 670033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00420 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 239 IPR016763 GO:0005789
Lsi09g00420 241 SUPERFAMILY PapD-like 2 141 IPR008962 -
Lsi09g00420 241 PIRSF VAMP_assoc_prot 1 240 IPR016763 GO:0005789
Lsi09g00420 241 Pfam MSP (Major sperm protein) domain 7 110 IPR000535 -
Lsi09g00420 241 Gene3D Immunoglobulins 2 130 IPR013783 -
Lsi09g00420 241 MobiDBLite consensus disorder prediction 143 160 - -
Lsi09g00420 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Lsi09g00420 241 Coils Coil 177 211 - -
Lsi09g00420 241 MobiDBLite consensus disorder prediction 129 160 - -
Lsi09g00420 241 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00420 - - - cmax:111468836 410.223
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01276 Lsi-Chr4:20136103 Lsi09g00420 Lsi-Chr9:4466804 3.14E-12 dispersed
Lsi06g00178 Lsi-Chr6:1916702 Lsi09g00420 Lsi-Chr9:4466804 1.37E-33 dispersed
Lsi07g01259 Lsi-Chr7:18406032 Lsi09g00420 Lsi-Chr9:4466804 2.58E-52 dispersed
Lsi09g00420 Lsi-Chr9:4466804 Lsi09g01624 Lsi-Chr9:24456632 1.99E-91 dispersed
Lsi09g00420 Lsi-Chr9:4466804 Lsi11g00486 Lsi-Chr11:5124576 7.45E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g534 Blo02g01044 Blo03g00161 Bda06g00029 Bda08g00576 Bpe05g00582 Bpe07g00176 . . . Cmo16g01161 . Cma15g01125 . Car15g01030 Sed04g1666 Cpe14g00917 . Bhi11g00073 Tan01g2092 Cmetu06g0529 . . Mch10g1587 . . . . . . . . . . . . . Csa05g00419 Chy09g01090 . Blo03g00417 . Bda07g00001 . . Bpe11g00268 Bma05g00421 Bma12g00643 . . Cmo15g01185 . Cma16g01109 . Car16g01047 . Cpe13g00231 Bhi12g00443 . . Lac11g2281 Hepe06g1669 . Lcy12g0040 Cla01g00395 Cam01g0412 Cec01g0403 Cco01g0424 Clacu01g0413 Cmu01g0394 Cre09g2117 Lsi09g00420 . . Cme09g01619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00420 Lsi_Chr09 FPKM 35.751572 39.143707 8.932518 10.607294 5.643907 6.535747 6.317276 3.027117 2.582331 3.053093