Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00424 ATGGCATTCTATTTTCCCTCATTTTTCTTCTTCACTTTCTTTCTTCTATGCTTTTCCGCCGCCGCCAAGCACCGCCACCACTGGGTCGGACCCAACGGGCACCGCCTGATCAAAGTGAACGTTAACGGCGGCTCCGATGAGTTTCTCTCCGTACAAGCCGCCGTGGATGCAGTTCCTGATTACAATACCGTCAACACCGTCATCCGAATTAGCCCTGGATATTACCCGTACATAACATTTGAAGGTGGAGGAAAAGAGACGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAGCTCCGTACTTACAGAACAGCCTCCGTTACCGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGCTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTTCGAATCTCCGGCGATAAAGCCTACTTTTCCGGCTGCGGATTCTACGGCGCACAAGATACGCTCTGCGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATCGAAGGCTCCATAGACTTCATCTTTGGAAATGGCCGTTCCATGTATAAGGATTGTGTGCTGCACTCGATCGCCACCCGGTTCGGTTCCATAGCAGCCCAAGATAGAAACTCGCCGTACGAGAAGACCGGGTTCGCGTTTGTCCGGTGCAAGGTGACCGGTTCAGGACCCGTGTACGTGGGACGAGCCATGGGCCAGTACTCCAGAATCGTCTATGCGTATACTTACTTTGATGACGTGGTGGCCCACGGTGGGTGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACAGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCAAGTAAAGTAAAGGGAGTATCATGGGCCAGGGAGTTGGAGTTTGAAGAGGCCCATCCATTTCTTGCCCAGAGCTTTGTCAATGGCAGACACTGGATTGCACCCTCTGATGCTTAG 990 53.64 MAFYFPSFFFFTFFLLCFSAAAKHRHHWVGPNGHRLIKVNVNGGSDEFLSVQAAVDAVPDYNTVNTVIRISPGYYPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCVLHSIATRFGSIAAQDRNSPYEKTGFAFVRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELEFEEAHPFLAQSFVNGRHWIAPSDA 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4495920 4501836 + Lsi09G004240.1 Lsi09g00424 670037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00424 329 ProSitePatterns Pectinesterase signature 2. 182 191 IPR033131 -
Lsi09g00424 329 SUPERFAMILY Pectin lyase-like 38 326 IPR011050 -
Lsi09g00424 329 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 328 - -
Lsi09g00424 329 PANTHER PECTINESTERASE 68-RELATED 20 328 - -
Lsi09g00424 329 Pfam Pectinesterase 42 320 IPR000070 GO:0030599|GO:0042545
Lsi09g00424 329 Gene3D - 35 328 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01846 Lsi-Chr2:24224202 Lsi09g00424 Lsi-Chr9:4495920 3.06E-77 dispersed
Lsi07g00229 Lsi-Chr7:2501961 Lsi09g00424 Lsi-Chr9:4495920 2.54E-76 dispersed
Lsi09g00424 Lsi-Chr9:4495920 Lsi10g00375 Lsi-Chr10:5763626 3.17E-71 dispersed
Lsi09g00424 Lsi-Chr9:4495920 Lsi03g01970 Lsi-Chr3:31110745 1.10E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00424 - - csv:101204661 636.336