Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00431 ATGGTGAAGTTGGCCGTCGGTTCCGCCGCCGATTCATTCAGTGCGGCCTCTCTCAAAGCCTATCTCTCTGAATTTATCGCCACTCTCCTTTTCGTCTTTGCCGGCGTCGGCTCCGCCATCGCTTACGGTAAGTTGACGTCCGATGCCGCACTGGATCCGCCAGGTTTGGTGGCAGTGGCGGTGGCTCACGCATTTGCACTGTTTGTCGGTGTGTCGATGGCAGCAAACATCTCCGGCGGCCACCTGAACCCGGCGGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATTGCTCAGTTGCTCGGCTCCATTGTTGCTTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGTATTCCGACCCACGGCGTGGCGGCGGGACTGGGAGCAATTGAAGGCGTAGTATTCGAGATAGTAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCCAAAAAGGGCTCTCTTGGAACCATTGCCCCAATCGCTATCGGCTTCATTGTGGGTGCCAACATTCTTGCCGCCGGCCCATTTAGCGGTGGGTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTCAGCGGAGACTTCTCTCAGATTTGGATCTATTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGCCTTATTTATGGCGACGTCTTTATTTCCTCTTATGCCCCTGTTCCTGTCTCTGGTGATTATGCTTAA 753 55.91 MVKLAVGSAADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFISSYAPVPVSGDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4593972 4597839 + Lsi09G004310.1 Lsi09g00431 670044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00431 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Lsi09g00431 250 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Lsi09g00431 250 PANTHER AQUAPORIN TIP2-2-RELATED 1 250 - -
Lsi09g00431 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Lsi09g00431 250 SUPERFAMILY Aquaporin-like 16 239 IPR023271 -
Lsi09g00431 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00431 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00431 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00431 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00431 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00431 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00431 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00431 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00431 250 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02816 Lsi-Chr2:34324196 Lsi09g00431 Lsi-Chr9:4593972 1.81E-113 dispersed
Lsi08g01089 Lsi-Chr8:19491710 Lsi09g00431 Lsi-Chr9:4593972 1.72E-63 dispersed
Lsi09g00431 Lsi-Chr9:4593972 Lsi09g00520 Lsi-Chr9:5432051 7.36E-62 dispersed
Lsi09g00431 Lsi-Chr9:4593972 Lsi03g01989 Lsi-Chr3:31267990 2.45E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00431 K09873 - csv:101203925 468.388