Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00458 ATGTACCAGAGCACTAAAACAGAGTCCGATTTTTGTTTCCTTGACCCAATTCGCCGCCATTTATTAGGCGAATCGGAGATTTCCACCGCCGCCGCCGCTCCCGGCGGCAGACCTACTCCCGTTTTCAGTCGGAGTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCTGAAGATATGATGCTGGCCGCCGTTCTCAGGGATGCCGTCGGAGCTGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTTTTCGGCGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGAGTTTCCCAGCGGTGCTACCGAATGTGGCGGTGAAGCCCGCAGTGGTACCGGAGAAGGGGAAGCATTATAGAGGAGTACGGCAACGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTCGGAACGTACGAGACGGCGGAGGATGCGGCGTTAGCTTATGATCGGGCGGCTTACCGAATGCGAGGCTCAAGGGCTCTGCTCAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCGGAACCGGTTCGGGTAACGTCGAAGCGATCATCGCCGGAGGTTTCGTCGTCGCCGAAGCGGCGGAAGAAAGTTGGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTTAGCCAATGTAGCCAATAA 759 56.26 MYQSTKTESDFCFLDPIRRHLLGESEISTAAAAPGGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFSAVKSEPEVLPVSFPAVLPNVAVKPAVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVEGGGVQVEQQVASFTHGGQLFVSQCSQ 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4842956 4843714 + Lsi09G004580.1 Lsi09g00458 670071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00458 252 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
Lsi09g00458 252 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Lsi09g00458 252 SUPERFAMILY DNA-binding domain 131 191 IPR016177 GO:0003677
Lsi09g00458 252 PANTHER BNAANNG21280D PROTEIN 25 231 - -
Lsi09g00458 252 MobiDBLite consensus disorder prediction 196 227 - -
Lsi09g00458 252 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Lsi09g00458 252 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Lsi09g00458 252 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Lsi09g00458 252 Gene3D AP2/ERF domain 130 192 IPR036955 GO:0003700|GO:0006355
Lsi09g00458 252 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Lsi09g00458 252 PANTHER DNA-BINDING DOMAIN 25 231 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00117 Lsi-Chr7:1335560 Lsi09g00458 Lsi-Chr9:4842956 1.96E-41 dispersed
Lsi09g00458 Lsi-Chr9:4842956 Lsi09g00489 Lsi-Chr9:5126546 2.01E-31 dispersed
Lsi07g01273 Lsi-Chr7:18538813 Lsi09g00458 Lsi-Chr9:4842956 7.12E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25879 PF00847 AP2 9.30E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00458 K09286 - csv:101221583 434.491