Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00466 ATGAAAAAGAAGAATGCAATAAACCCTATATTTGATGAATCTTCTCAAGTTACTCACGACATTCACTCGACCGTCTTTCCATATTTTGCTCGGTGGCAAACTACTTATGGAAAAGTGTTTATATATTGGTTGGGGACAGAGCCATTTTTGTACATTGGAGAGCCAGAAATTGTGAAGATATTATCAAGAGAAGTAAAAGCAAAGTATTGGGGAAAGCCATTAGTGTTCAAAAATGACAGAAAATCAATGTTTGGAAATGGTTTGGTAATGGCTGAAGGAGATGAGTGGGTTCGCCAAAGACATATCATCACTCCTGCATTTAATCCTTCCAACTTGAAGGCAATGGCAAGCTTAATGGTGGAGTCCGCCACCCAAATGGTGGAGAGATGGGCCAACCTCGTCATCTCCGGCCACCCACAAATCGAAGTCGAGCAAGAAATAACTTCCACCGCCGGCGAAATCATCGCCAAAACCAGCTTCGGAATCCACCATGAAAGCGGCCGCCAAGTCTTCAACAAACTCCGCCATCTCCAAATCACTCTCTTCAAAACCAACCGCCTTGTCGGAGTCCCCTTTGCCGGACTTCTAAACGCCGCCAAGGCCCAGGAGGCCAAACGCCTTGGGGAAGAGATCGACGCCTTGTTTCTGTCGGTGATTACTGAGAGGAGAAAGAATGCGGCGGCGGTGGGGGAGCAGCAGAATGATCTGTTGAGTTTACTTTTGAAAGAGAGTAGTGGCGACGGCGGAGAAGGGAGGAGGCCGCTGAGTACGACGGAGCTGATTGATGAATGTAAAACGTTCTTCTTTGGTGGACATGAAACGACGGCGTTGGCTCTGACGTGGACTTTGATGCTATTGGCTATTCATTCTGAGTGGCAGATAAAGTTGAGAGAGGAAATTAAGGAAGTGTTTGGTGATTATAATATAAAAACTCACTTTGATTTCACCAACCTTTCTTCACTCAAAAAGATGGGATGGGTGATGAGTGAGGTTCTACGTCTATATCCATCAGCTCCAAACGTACAAAGACAAGCAAGAAAAGACATTACAATAAACGGACTCACAATCCCAAATGGCACCAACATGTGGATCGATGTTGTATCAATGCACCATGATCAAGCCCTTTGGGGCCACCAAGTCAATGAATTTCACCCCGAGAGGTTTCAAAACGACGTCGTTTCGGGCAGCTGCAACCACAAGATGGGTTATTTGCCCTTTGGCTTTGGAGGAAGAATGTGTGTTGGTAGGCACTTGACGTTTATGGAGTATAAGATTGTCTTGACTCTTATTCTGTCTAAGTTTTCCTTCTCTCTATCACCCGATTATCGACATTCGCCTTCTATAATGCTCTCGCTCCGACCTGCCCATGGGTTACCTCTCGTTTTTCGGTTACTTGATGACTAA 1404 45.37 MKKKNAINPIFDESSQVTHDIHSTVFPYFARWQTTYGKVFIYWLGTEPFLYIGEPEIVKILSREVKAKYWGKPLVFKNDRKSMFGNGLVMAEGDEWVRQRHIITPAFNPSNLKAMASLMVESATQMVERWANLVISGHPQIEVEQEITSTAGEIIAKTSFGIHHESGRQVFNKLRHLQITLFKTNRLVGVPFAGLLNAAKAQEAKRLGEEIDALFLSVITERRKNAAAVGEQQNDLLSLLLKESSGDGGEGRRPLSTTELIDECKTFFFGGHETTALALTWTLMLLAIHSEWQIKLREEIKEVFGDYNIKTHFDFTNLSSLKKMGWVMSEVLRLYPSAPNVQRQARKDITINGLTIPNGTNMWIDVVSMHHDQALWGHQVNEFHPERFQNDVVSGSCNHKMGYLPFGFGGRMCVGRHLTFMEYKIVLTLILSKFSFSLSPDYRHSPSIMLSLRPAHGLPLVFRLLDD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4882351 4888634 + Lsi09G004660.1 Lsi09g00466 670079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00466 467 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 461 - -
Lsi09g00466 467 Gene3D Cytochrome P450 7 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 SUPERFAMILY Cytochrome P450 21 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 406 415 IPR017972 GO:0005506|GO:0016705
Lsi09g00466 467 PRINTS P450 superfamily signature 270 287 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PRINTS P450 superfamily signature 413 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PRINTS P450 superfamily signature 404 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PRINTS P450 superfamily signature 326 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PRINTS E-class P450 group I signature 403 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PRINTS E-class P450 group I signature 33 52 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PRINTS E-class P450 group I signature 279 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PRINTS E-class P450 group I signature 259 276 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PRINTS E-class P450 group I signature 413 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00466 467 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 1 461 - -
Lsi09g00466 467 Pfam Cytochrome P450 19 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01001 Lsi-Chr4:11167636 Lsi09g00466 Lsi-Chr9:4882351 1.51E-74 dispersed
Lsi09g00466 Lsi-Chr9:4882351 Lsi11g00296 Lsi-Chr11:3063954 6.67E-99 dispersed
Lsi05g01219 Lsi-Chr5:20089302 Lsi09g00466 Lsi-Chr9:4882351 6.92E-120 transposed
Lsi05g01218 Lsi-Chr5:20088120 Lsi09g00466 Lsi-Chr9:4882351 5.93E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00466 - - cmo:103482547 820.846