Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00476 ATGCCTTCATGGTGGAAGTCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTAATCGACACATTGCAGAGAAAACTTAGAACTAATGATGGTAAAACAAACAGCAAATCAGGAGTCTCTCCAAAAAATTGTAATGACACAATTTCTGAGCGGGGATCTCGATCTCCTATTCTTTCAAGATCAGTTTCCCCTTCCAAACAAGTTTCAAGATGTCAAAGCTTTTCTGAAGGGCCACAAGCACAACCTCTTCCACTTCCTGGTGTGCAGCCACCAATTGTAGGTCGTACAGACTCTGGGATTAGTATTTCACCGAAACAAAGATCAGAAAGGGGCTCCAAGCCATCATCATTTCTACCACTTCCACCAGCATGCATTCGTGGGAGGCCAAACCATGCAGATTTAGATGCAGATGTTGGTGTCGGCTCAGTGTCTAGTGAGAGCTCAACTGATAGCACAGATCTATCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCCGGCAGTCCTTCCAGTGTCATTCTTAAGGATCAGTCTTCTACTGTCACCCAACCAAGTTCGCAAAAGGCCAGAAAACCAGCAAATATCTCATTGAACAACCACATTTTCTCAACATCACCCAAGCGGAGGCCTTTAAGCAGTCATGTTCCAAATCTGCAAGTTCCATATCATGGGAATTCATGCATTGCTCCAGATAGTTCAATGTCAAGTCCTTCTAGAAGTCCCATAAGGGCATTTAGCACAGAGCAATTTATTAATAATGCTGTCAGTGCTGGAAAGCTCTATATGGATGTCACATTTCCTGGGTCAGGCCATTGTTCCAGTCCTGGTTCTGGTTACAATTCTGGCCATAATTCTATGGGTGGGGATTTGTCAGGGCAGTTATTTTTGCAACAAAGCCGGGGTAGCCCTGAATATTCTCCAGCACCCAGTCCCAGAATGACCAGCCCTGGCCCAAGCTCCAGAGTCCATAGTGGTGCAGTAACCCCAATTCATCCTAGGGCGGGAGGTATACCAACTGAGTCACAGACAAGCTGGCCCGATGAAAAGCAAACTCACCGCTTGCCTCTACCTCCAGTTGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCTGCAAGCCCGGGCTCCCGTTGGAAAAAGGGGAAACTTTTGGGTAGGGGTACTTTCGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGGAATGTGTGCAATGAAGGAAGTTACATTATTTTCCGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTAGGGCATCCGAATATTGTGCAGTATTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGAATCCGCACTTCGTAGTTATACCAAGCAAATATTGTCAGGGCTTGCATATTTACATGCTAAAAGTACTGTTCACAGGGATATCAAAGGAGCAAATATACTTGTCGAACCCACCGGGCAGGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACTGGGCAATCGTGTCCTTTGTCTTTTAAAGGAAGCCCGTACTGGATGGCACCTGAGGTCGGACCACCTGTTATTAAAAACTCAAATGGTTGCAACCTTGCGGTCGCTGCAATGTTCAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCGGAGCACCTTCCACATGATGGAAAAGACTTTGTTAGACAATGTCTGCAACGGAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAACATCCTTTTGTCAAAGATGCTGCACCTCTTGAAAGACCGATTTTAGGTTCTCAACATTCAGATCCAACTCCAGGAATTACAAATGGAGTAAGAACTCCGGGTATTGAGCAAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCACAACAGCTGCTTTCCATTCCAGTGAATTCCATATTCCAAGGAACCTATCATGTCCTGTTTCGCCCATTGGAAGCCCTCTAGTGCACTCACGGTCCCCACAACATCCCAGTGGAAGAATGTCTCCGTCACCCATCTCCAGCCCTCGTAACATGTCGGGTGCATCCACACCTCTCACGGGAGGAAGCGGTGCCATTCCACACCAGCATCTCAAGCAATCACTATACCTACAGGAGGGTTTTGGGAGCTTGCCAAAGCCTTCAATAGCACCCTATAGCAATGGCCCTTCCTATCACGATACGAAGCCTGACATCTTTCAGGGGATTCAGCCAGGCTCTCACATCTTTTCTGAGCCGGTACACCATGAAACTGATTTTCTTGTTAAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACAGGCAAGGGGTCTTGGCTGATCGTGTTTCTAGGCAGCTGCTGAGTGATCGCATAACAACTCCATCCCTGGATTTAAGTCCGAGTTCTCTTTTGACCAACCGCAAATAG 2601 46.06 MPSWWKSSSKEVKKSKESLIDTLQRKLRTNDGKTNSKSGVSPKNCNDTISERGSRSPILSRSVSPSKQVSRCQSFSEGPQAQPLPLPGVQPPIVGRTDSGISISPKQRSERGSKPSSFLPLPPACIRGRPNHADLDADVGVGSVSSESSTDSTDLSDSRHRSPQATDYDLGTKTAAGSPSSVILKDQSSTVTQPSSQKARKPANISLNNHIFSTSPKRRPLSSHVPNLQVPYHGNSCIAPDSSMSSPSRSPIRAFSTEQFINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGGMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLGHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGESALRSYTKQILSGLAYLHAKSTVHRDIKGANILVEPTGQVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVGPPVIKNSNGCNLAVAAMFKIGNSKELPEIPEHLPHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKDAAPLERPILGSQHSDPTPGITNGVRTPGIEQGRNPSFLDSDRSAAHSSRLTTAAFHSSEFHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIAPYSNGPSYHDTKPDIFQGIQPGSHIFSEPVHHETDFLVKQFGKPAWELYDRQGVLADRVSRQLLSDRITTPSLDLSPSSLLTNRK 866
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5009804 5017055 + Lsi09G004760.1 Lsi09g00476 670089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00476 866 MobiDBLite consensus disorder prediction 373 391 - -
Lsi09g00476 866 Gene3D Transferase(Phosphotransferase) domain 1 403 657 - -
Lsi09g00476 866 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 590 - -
Lsi09g00476 866 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 590 788 - -
Lsi09g00476 866 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 590 788 - -
Lsi09g00476 866 MobiDBLite consensus disorder prediction 1 203 - -
Lsi09g00476 866 MobiDBLite consensus disorder prediction 100 114 - -
Lsi09g00476 866 ProSitePatterns Protein kinases ATP-binding region signature. 411 434 IPR017441 GO:0005524
Lsi09g00476 866 MobiDBLite consensus disorder prediction 719 754 - -
Lsi09g00476 866 MobiDBLite consensus disorder prediction 9 32 - -
Lsi09g00476 866 MobiDBLite consensus disorder prediction 651 687 - -
Lsi09g00476 866 MobiDBLite consensus disorder prediction 713 758 - -
Lsi09g00476 866 Pfam Protein kinase domain 406 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00476 866 SMART serkin_6 405 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00476 866 ProSiteProfiles Protein kinase domain profile. 405 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00476 866 MobiDBLite consensus disorder prediction 33 80 - -
Lsi09g00476 866 SUPERFAMILY Protein kinase-like (PK-like) 403 728 IPR011009 -
Lsi09g00476 866 MobiDBLite consensus disorder prediction 281 408 - -
Lsi09g00476 866 MobiDBLite consensus disorder prediction 167 203 - -
Lsi09g00476 866 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 590 - -
Lsi09g00476 866 MobiDBLite consensus disorder prediction 281 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01155 Lsi-Chr1:9726565 Lsi09g00476 Lsi-Chr9:5009804 1.17E-105 dispersed
Lsi08g01440 Lsi-Chr8:22594837 Lsi09g00476 Lsi-Chr9:5009804 1.58E-69 dispersed
Lsi09g00476 Lsi-Chr9:5009804 Lsi09g01341 Lsi-Chr9:21376951 3.79E-65 dispersed
Lsi09g00980 Lsi-Chr9:13093744 Lsi09g00476 Lsi-Chr9:5009804 3.38E-34 dispersed
Lsi05g01214 Lsi-Chr5:20005153 Lsi09g00476 Lsi-Chr9:5009804 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83880 PF00069 Pkinase 5.80E-48 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00476 K20717 - csv:101222716 1565.44