Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00476 | ATGCCTTCATGGTGGAAGTCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTAATCGACACATTGCAGAGAAAACTTAGAACTAATGATGGTAAAACAAACAGCAAATCAGGAGTCTCTCCAAAAAATTGTAATGACACAATTTCTGAGCGGGGATCTCGATCTCCTATTCTTTCAAGATCAGTTTCCCCTTCCAAACAAGTTTCAAGATGTCAAAGCTTTTCTGAAGGGCCACAAGCACAACCTCTTCCACTTCCTGGTGTGCAGCCACCAATTGTAGGTCGTACAGACTCTGGGATTAGTATTTCACCGAAACAAAGATCAGAAAGGGGCTCCAAGCCATCATCATTTCTACCACTTCCACCAGCATGCATTCGTGGGAGGCCAAACCATGCAGATTTAGATGCAGATGTTGGTGTCGGCTCAGTGTCTAGTGAGAGCTCAACTGATAGCACAGATCTATCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCCGGCAGTCCTTCCAGTGTCATTCTTAAGGATCAGTCTTCTACTGTCACCCAACCAAGTTCGCAAAAGGCCAGAAAACCAGCAAATATCTCATTGAACAACCACATTTTCTCAACATCACCCAAGCGGAGGCCTTTAAGCAGTCATGTTCCAAATCTGCAAGTTCCATATCATGGGAATTCATGCATTGCTCCAGATAGTTCAATGTCAAGTCCTTCTAGAAGTCCCATAAGGGCATTTAGCACAGAGCAATTTATTAATAATGCTGTCAGTGCTGGAAAGCTCTATATGGATGTCACATTTCCTGGGTCAGGCCATTGTTCCAGTCCTGGTTCTGGTTACAATTCTGGCCATAATTCTATGGGTGGGGATTTGTCAGGGCAGTTATTTTTGCAACAAAGCCGGGGTAGCCCTGAATATTCTCCAGCACCCAGTCCCAGAATGACCAGCCCTGGCCCAAGCTCCAGAGTCCATAGTGGTGCAGTAACCCCAATTCATCCTAGGGCGGGAGGTATACCAACTGAGTCACAGACAAGCTGGCCCGATGAAAAGCAAACTCACCGCTTGCCTCTACCTCCAGTTGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCTGCAAGCCCGGGCTCCCGTTGGAAAAAGGGGAAACTTTTGGGTAGGGGTACTTTCGGGCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGGAATGTGTGCAATGAAGGAAGTTACATTATTTTCCGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTAGGGCATCCGAATATTGTGCAGTATTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGAATCCGCACTTCGTAGTTATACCAAGCAAATATTGTCAGGGCTTGCATATTTACATGCTAAAAGTACTGTTCACAGGGATATCAAAGGAGCAAATATACTTGTCGAACCCACCGGGCAGGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACTGGGCAATCGTGTCCTTTGTCTTTTAAAGGAAGCCCGTACTGGATGGCACCTGAGGTCGGACCACCTGTTATTAAAAACTCAAATGGTTGCAACCTTGCGGTCGCTGCAATGTTCAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCGGAGCACCTTCCACATGATGGAAAAGACTTTGTTAGACAATGTCTGCAACGGAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAACATCCTTTTGTCAAAGATGCTGCACCTCTTGAAAGACCGATTTTAGGTTCTCAACATTCAGATCCAACTCCAGGAATTACAAATGGAGTAAGAACTCCGGGTATTGAGCAAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCACAACAGCTGCTTTCCATTCCAGTGAATTCCATATTCCAAGGAACCTATCATGTCCTGTTTCGCCCATTGGAAGCCCTCTAGTGCACTCACGGTCCCCACAACATCCCAGTGGAAGAATGTCTCCGTCACCCATCTCCAGCCCTCGTAACATGTCGGGTGCATCCACACCTCTCACGGGAGGAAGCGGTGCCATTCCACACCAGCATCTCAAGCAATCACTATACCTACAGGAGGGTTTTGGGAGCTTGCCAAAGCCTTCAATAGCACCCTATAGCAATGGCCCTTCCTATCACGATACGAAGCCTGACATCTTTCAGGGGATTCAGCCAGGCTCTCACATCTTTTCTGAGCCGGTACACCATGAAACTGATTTTCTTGTTAAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACAGGCAAGGGGTCTTGGCTGATCGTGTTTCTAGGCAGCTGCTGAGTGATCGCATAACAACTCCATCCCTGGATTTAAGTCCGAGTTCTCTTTTGACCAACCGCAAATAG | 2601 | 46.06 | MPSWWKSSSKEVKKSKESLIDTLQRKLRTNDGKTNSKSGVSPKNCNDTISERGSRSPILSRSVSPSKQVSRCQSFSEGPQAQPLPLPGVQPPIVGRTDSGISISPKQRSERGSKPSSFLPLPPACIRGRPNHADLDADVGVGSVSSESSTDSTDLSDSRHRSPQATDYDLGTKTAAGSPSSVILKDQSSTVTQPSSQKARKPANISLNNHIFSTSPKRRPLSSHVPNLQVPYHGNSCIAPDSSMSSPSRSPIRAFSTEQFINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGGMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLGHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGESALRSYTKQILSGLAYLHAKSTVHRDIKGANILVEPTGQVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVGPPVIKNSNGCNLAVAAMFKIGNSKELPEIPEHLPHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKDAAPLERPILGSQHSDPTPGITNGVRTPGIEQGRNPSFLDSDRSAAHSSRLTTAAFHSSEFHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIAPYSNGPSYHDTKPDIFQGIQPGSHIFSEPVHHETDFLVKQFGKPAWELYDRQGVLADRVSRQLLSDRITTPSLDLSPSSLLTNRK | 866 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5009804 | 5017055 | + | Lsi09G004760.1 | Lsi09g00476 | 670089 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 373 | 391 | - | - | |
Lsi09g00476 | 866 | Gene3D | Transferase(Phosphotransferase) domain 1 | 403 | 657 | - | - | |
Lsi09g00476 | 866 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA | 1 | 590 | - | - | |
Lsi09g00476 | 866 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA | 590 | 788 | - | - | |
Lsi09g00476 | 866 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 590 | 788 | - | - | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 1 | 203 | - | - | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - | |
Lsi09g00476 | 866 | ProSitePatterns | Protein kinases ATP-binding region signature. | 411 | 434 | IPR017441 | GO:0005524 | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 719 | 754 | - | - | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 9 | 32 | - | - | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 651 | 687 | - | - | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 713 | 758 | - | - | |
Lsi09g00476 | 866 | Pfam | Protein kinase domain | 406 | 575 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g00476 | 866 | SMART | serkin_6 | 405 | 640 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g00476 | 866 | ProSiteProfiles | Protein kinase domain profile. | 405 | 640 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 33 | 80 | - | - | |
Lsi09g00476 | 866 | SUPERFAMILY | Protein kinase-like (PK-like) | 403 | 728 | IPR011009 | - | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 281 | 408 | - | - | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 167 | 203 | - | - | |
Lsi09g00476 | 866 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 590 | - | - | |
Lsi09g00476 | 866 | MobiDBLite | consensus disorder prediction | 281 | 315 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01155 | Lsi-Chr1:9726565 | Lsi09g00476 | Lsi-Chr9:5009804 | 1.17E-105 | dispersed | |
Lsi08g01440 | Lsi-Chr8:22594837 | Lsi09g00476 | Lsi-Chr9:5009804 | 1.58E-69 | dispersed | |
Lsi09g00476 | Lsi-Chr9:5009804 | Lsi09g01341 | Lsi-Chr9:21376951 | 3.79E-65 | dispersed | |
Lsi09g00980 | Lsi-Chr9:13093744 | Lsi09g00476 | Lsi-Chr9:5009804 | 3.38E-34 | dispersed | |
Lsi05g01214 | Lsi-Chr5:20005153 | Lsi09g00476 | Lsi-Chr9:5009804 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83880 | PF00069 | Pkinase | 5.80E-48 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00476 | K20717 | - | csv:101222716 | 1565.44 |