Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00480 ATGGAAGACGAAGCCAATAGAAATCTTATGTTGCTGCCTCCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTCCCAACTCCAATGGGAAATTCAATTCCAATTTCACAAGTTCGTGATGATGTTGCTGCGGCTTACAGGAAAGAAATCTGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTCCAGCCTTACTCTAATTTGAATTATGTTCATCTTGATGTTGCAACTCTTGAAGCAGATGATGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTCTTCAATCAACAAGCTTGTTATAGGAGTTTCATCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAGATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGACCTCCTGATATGGAGACAAGCGTCAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGCAAATAGCTACTCGAGCTATTCATCTAGTTCCCTTACAGATGCCAGTTCGAGCTTAATTACCTCCTACTCTCATTTCCCTTCTCCTTCCCCTTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACAACAAAACCAAGCCCCATTAAAGCCAATCATTCTAGATGTCAATCCGTTGATATTGAGGATCAGGTGGATGGAGTTCGTTCTTCTTCCTATGTTTCAGATTGCGCACAAACATTGAGTCGAACCTCTAGTTGTAAGAGCTTGCCAACAGATAACCAGTCTTGGGTTTCTGATGAAGCTTCATCCTCAGGCGCGTTCAATGATTATTCTTCATCTGAAAGTCAGGCAGATGTCAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACGATTGATGCCTCTCGAAAGCAAGAAAAGAAAAGTCACCTCGTTATTGTCTATGATCAGCTGAACCATCTAAATAAGCAACGATCAGACGAAGCTAGGAAGCTCGAAGAAATCAACAATAAAGAGGTGGCCGCCAAAGAATTTGCAATGGAAGAGAGAATGAAACGTGAAGCTTTGAGAAGAGAAGCAAAGTATGTAAAAGAATGCGCCGAAAGAGAGGGTATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGACCTTTGCAGCAATACCAACATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGGTCACAAAAGGATGCAACTTCTTCAGGAGCTCGAAATCTTGAGCAGAATCCATCATCCCCATCTACTACTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCCGGGGCAATACACCTGCAATCCCGTGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCAATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTCGTGAGCAAAATCGGCGATGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTCAATGTCTACTGCGTTCATGAATAGTGGACCAGTTGGGACTCTCTGTTATATTGATCCTGAATATCAACGAACTGGATTAGTTTCACCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTACAGTTACTAACTGCAAAACCAGCAGTAGCACTAACTCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGCATTGGCCTGTCGAAGAGACGTGTGAATTGGCAAGATTAGGACTTCGCTGCGCCGAGATGCAACGTAAAGATAGGCCTGACTTGAAGGATCAAGTACTTCCCTTGTTGATGACACTGAAAAAAGTTGCTCACGAGGCTCGCAACTTGGCCTCCAAAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCGATTCTTCAGGACATGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCAATAGAGAAGTGGTTTCAGGAGAACGATAACTCACCGATGACGAAGTTGCCGCTGCCAGATAAGAATTTAATACCAAATTATAGTCTTCATTGCATAGTCATGTCTACCAGTGAGCTCGCCTGCTCCAACGCCGCCGCGGCTCCTTCTAATGATGGAATCACTAGCATTGTACGAACGATTCTCTTGTTCTGTATTTATCTTGCTTCGAGGTCGTGGTCAAGAGTTTGA 2589 42.64 MEDEANRNLMLLPPPSPVVAVAISGKKNSKYIIRWSLEKFLPEGITDFKLLHIIPRITSVPTPMGNSIPISQVRDDVAAAYRKEIWWQTSEKLLPYKKMFAQRKVQPYSNLNYVHLDVATLEADDVANAIIEEVTKSSINKLVIGVSSQGLFSRKLNGLSSRISALAPRYCTVYAISKGKLASIRPPDMETSVSIKDDASEASSANSYSSYSSSSLTDASSSLITSYSHFPSPSPSLPLQRFQALSTINQSLLTTKPSPIKANHSRCQSVDIEDQVDGVRSSSYVSDCAQTLSRTSSCKSLPTDNQSWVSDEASSSGAFNDYSSSESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKQEKKSHLVIVYDQLNHLNKQRSDEARKLEEINNKEVAAKEFAMEERMKREALRREAKYVKECAEREGIYRKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDGHKRMQLLQELEILSRIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPSMSTAFMNSGPVGTLCYIDPEYQRTGLVSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGHWPVEETCELARLGLRCAEMQRKDRPDLKDQVLPLLMTLKKVAHEARNLASKVPAAIPNHFICPILQDMMNDPCVAADGYTYDRRAIEKWFQENDNSPMTKLPLPDKNLIPNYSLHCIVMSTSELACSNAAAAPSNDGITSIVRTILLFCIYLASRSWSRV 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5047100 5059090 + Lsi09G004800.1 Lsi09g00480 670093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00480 862 Coils Coil 335 355 - -
Lsi09g00480 862 Pfam U-box domain 758 817 IPR003613 GO:0004842|GO:0016567
Lsi09g00480 862 ProSiteProfiles Protein kinase domain profile. 475 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00480 862 CDD STK_N 18 179 - -
Lsi09g00480 862 MobiDBLite consensus disorder prediction 303 323 - -
Lsi09g00480 862 SUPERFAMILY Protein kinase-like (PK-like) 456 731 IPR011009 -
Lsi09g00480 862 PANTHER OS02G0152300 PROTEIN 16 822 - -
Lsi09g00480 862 SUPERFAMILY RING/U-box 751 820 - -
Lsi09g00480 862 ProSiteProfiles U-box domain profile. 757 830 IPR003613 GO:0004842|GO:0016567
Lsi09g00480 862 Gene3D Phosphorylase Kinase; domain 1 444 547 - -
Lsi09g00480 862 SMART Ubox_2 761 823 IPR003613 GO:0004842|GO:0016567
Lsi09g00480 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Lsi09g00480 862 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 16 822 - -
Lsi09g00480 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 757 825 IPR013083 -
Lsi09g00480 862 ProSitePatterns Protein kinases ATP-binding region signature. 481 502 IPR017441 GO:0005524
Lsi09g00480 862 Pfam Protein kinase domain 477 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00480 862 SMART serkin_6 475 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00480 862 Coils Coil 376 396 - -
Lsi09g00480 862 Gene3D Transferase(Phosphotransferase) domain 1 548 756 - -
Lsi09g00480 862 CDD RING-Ubox_WDSUB1_like 762 802 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00480 Lsi-Chr9:5047100 Lsi11g01167 Lsi-Chr11:20180516 2.86E-111 dispersed
Lsi09g00480 Lsi-Chr9:5047100 Lsi11g00178 Lsi-Chr11:1853251 4.45E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83881 PF00069 Pkinase 3.10E-40 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00480 - - csv:101217665 1357.04