Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00480 ATGGAAGACGAAGCCAATAGAAATCTTATGTTGCTGCCTCCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGAAAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACATCATCCCAAGGATTACTAGTGTCCCAACTCCAATGGGAAATTCAATTCCAATTTCACAAGTTCGTGATGATGTTGCTGCGGCTTACAGGAAAGAAATCTGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTCAGAGAAAGGTCCAGCCTTACTCTAATTTGAATTATGTTCATCTTGATGTTGCAACTCTTGAAGCAGATGATGTGGCAAATGCAATAATAGAAGAGGTTACAAAGTCTTCAATCAACAAGCTTGTTATAGGAGTTTCATCACAGGGATTATTCTCAAGGAAACTAAACGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAGATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGACCTCCTGATATGGAGACAAGCGTCAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGCAAATAGCTACTCGAGCTATTCATCTAGTTCCCTTACAGATGCCAGTTCGAGCTTAATTACCTCCTACTCTCATTTCCCTTCTCCTTCCCCTTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACAACAAAACCAAGCCCCATTAAAGCCAATCATTCTAGATGTCAATCCGTTGATATTGAGGATCAGGTGGATGGAGTTCGTTCTTCTTCCTATGTTTCAGATTGCGCACAAACATTGAGTCGAACCTCTAGTTGTAAGAGCTTGCCAACAGATAACCAGTCTTGGGTTTCTGATGAAGCTTCATCCTCAGGCGCGTTCAATGATTATTCTTCATCTGAAAGTCAGGCAGATGTCAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCGAGAGGAATGTATGCAATTGCTCAACGTGAGACGATTGATGCCTCTCGAAAGCAAGAAAAGAAAAGTCACCTCGTTATTGTCTATGATCAGCTGAACCATCTAAATAAGCAACGATCAGACGAAGCTAGGAAGCTCGAAGAAATCAACAATAAAGAGGTGGCCGCCAAAGAATTTGCAATGGAAGAGAGAATGAAACGTGAAGCTTTGAGAAGAGAAGCAAAGTATGTAAAAGAATGCGCCGAAAGAGAGGGTATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGACCTTTGCAGCAATACCAACATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGGTCACAAAAGGATGCAACTTCTTCAGGAGCTCGAAATCTTGAGCAGAATCCATCATCCCCATCTACTACTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTGTACCGCCGGGGCAATACACCTGCAATCCCGTGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCAATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTCGTGAGCAAAATCGGCGATGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTCAATGTCTACTGCGTTCATGAATAGTGGACCAGTTGGGACTCTCTGTTATATTGATCCTGAATATCAACGAACTGGATTAGTTTCACCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTACAGTTACTAACTGCAAAACCAGCAGTAGCACTAACTCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGCATTGGCCTGTCGAAGAGACGTGTGAATTGGCAAGATTAGGACTTCGCTGCGCCGAGATGCAACGTAAAGATAGGCCTGACTTGAAGGATCAAGTACTTCCCTTGTTGATGACACTGAAAAAAGTTGCTCACGAGGCTCGCAACTTGGCCTCCAAAGTTCCAGCTGCAATTCCTAATCATTTCATCTGTCCGATTCTTCAGGACATGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCGGGCAATAGAGAAGTGGTTTCAGGAGAACGATAACTCACCGATGACGAAGTTGCCGCTGCCAGATAAGAATTTAATACCAAATTATAGTCTTCATTGCATAGTCATGTCTACCAGTGAGCTCGCCTGCTCCAACGCCGCCGCGGCTCCTTCTAATGATGGAATCACTAGCATTGTACGAACGATTCTCTTGTTCTGTATTTATCTTGCTTCGAGGTCGTGGTCAAGAGTTTGA 2589 42.64 MEDEANRNLMLLPPPSPVVAVAISGKKNSKYIIRWSLEKFLPEGITDFKLLHIIPRITSVPTPMGNSIPISQVRDDVAAAYRKEIWWQTSEKLLPYKKMFAQRKVQPYSNLNYVHLDVATLEADDVANAIIEEVTKSSINKLVIGVSSQGLFSRKLNGLSSRISALAPRYCTVYAISKGKLASIRPPDMETSVSIKDDASEASSANSYSSYSSSSLTDASSSLITSYSHFPSPSPSLPLQRFQALSTINQSLLTTKPSPIKANHSRCQSVDIEDQVDGVRSSSYVSDCAQTLSRTSSCKSLPTDNQSWVSDEASSSGAFNDYSSSESQADVSFELEKLRIELRHARGMYAIAQRETIDASRKQEKKSHLVIVYDQLNHLNKQRSDEARKLEEINNKEVAAKEFAMEERMKREALRREAKYVKECAEREGIYRKEAETKALQDAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDGHKRMQLLQELEILSRIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPSMSTAFMNSGPVGTLCYIDPEYQRTGLVSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGHWPVEETCELARLGLRCAEMQRKDRPDLKDQVLPLLMTLKKVAHEARNLASKVPAAIPNHFICPILQDMMNDPCVAADGYTYDRRAIEKWFQENDNSPMTKLPLPDKNLIPNYSLHCIVMSTSELACSNAAAAPSNDGITSIVRTILLFCIYLASRSWSRV 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5047100 5059090 + Lsi09G004800.1 Lsi09g00480 670093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00480 862 Coils Coil 335 355 - -
Lsi09g00480 862 Pfam U-box domain 758 817 IPR003613 GO:0004842|GO:0016567
Lsi09g00480 862 ProSiteProfiles Protein kinase domain profile. 475 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00480 862 CDD STK_N 18 179 - -
Lsi09g00480 862 MobiDBLite consensus disorder prediction 303 323 - -
Lsi09g00480 862 SUPERFAMILY Protein kinase-like (PK-like) 456 731 IPR011009 -
Lsi09g00480 862 PANTHER OS02G0152300 PROTEIN 16 822 - -
Lsi09g00480 862 SUPERFAMILY RING/U-box 751 820 - -
Lsi09g00480 862 ProSiteProfiles U-box domain profile. 757 830 IPR003613 GO:0004842|GO:0016567
Lsi09g00480 862 Gene3D Phosphorylase Kinase; domain 1 444 547 - -
Lsi09g00480 862 SMART Ubox_2 761 823 IPR003613 GO:0004842|GO:0016567
Lsi09g00480 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Lsi09g00480 862 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 16 822 - -
Lsi09g00480 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 757 825 IPR013083 -
Lsi09g00480 862 ProSitePatterns Protein kinases ATP-binding region signature. 481 502 IPR017441 GO:0005524
Lsi09g00480 862 Pfam Protein kinase domain 477 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00480 862 SMART serkin_6 475 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00480 862 Coils Coil 376 396 - -
Lsi09g00480 862 Gene3D Transferase(Phosphotransferase) domain 1 548 756 - -
Lsi09g00480 862 CDD RING-Ubox_WDSUB1_like 762 802 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00480 - - - csv:101217665 1357.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00480 Lsi-Chr9:5047100 Lsi11g01167 Lsi-Chr11:20180516 2.86E-111 dispersed
Lsi09g00480 Lsi-Chr9:5047100 Lsi11g00178 Lsi-Chr11:1853251 4.45E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007149 1 0 1 0 1 1 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 0 0 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83881 PF00069 Pkinase 3.10E-40 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00480 Lsi_Chr09 FPKM 4.788328 3.063706 5.142923 4.890494 2.49427 1.688848 1.648893 0.670997 0.636861 0.967978