Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00482 ATGGAAAGGATGTCTGGATTTTCGACATTGATGAGACCTTGCTTTCTAATCTTCCTTACTACACAGACCATGGTTATGGGAGAGATGATGACCAAGGGAAGTCAGCAATACTTTACAAATCTGAGAAGCGGAGCGAGATGGAGAACGAAGGATTACGAATCATCGGAAACTCTGCTCTCTAAAAATCACCACATCCACAACCCTTCCTCCAACAAGAACAAGAAAACAGACCACACGCCGCCGCCGCCGGAGCTGACGACTTTTGAGGGCGGTGAAGATTTAACGATCGACGAAATTCTAGAAGCTCCAGGGGAAGTGATCGGAAAATCCCACTATGGAACTCTGTATAAAGCTACGTTACAGAGCACCCAAACGACCCGGTTACTCAGATTCCTCCGACCGGCCGTGGGCGGAGGAGACGACAACCACGACGTCGTTCGGTTTCTGGGTTCGATTCGGCACCGGAATCTGGTCCCGTTGCTGGGATTCTACGCCGGCGGGAGGGGTGAGAAGCTTCTGGTTCATCCGTTCTACGAGCAGGGGAATTTGGCGGAGTTCATTAGAGTAGATGAAACAGAGAGAAAAAATTGGGAGATCATTTACAAAATCTCCATCGGAGTAGCAAAAGCCCTACATCATCTTCACAACGGATTACAAAAACCAATCCCTCATGGAAATCTCAACTCCAACAACATTCTTCTCGATCAAAATCTCGATCCGCACGTCTCCGATTTTGGCCTCCATCTCCTCCTCAACGCCGTCGCAACTCGAGAAATGCTCCAAGTTTCCGCCGCCTCTGGCTACAAGGCGCCGGAACTTATCAAGATGACCGACGCTGATGAACGCACCGACGTCTACAGCTACGGCAAGATCTTACTCGAGTTGCTCTCTACCAAAGAGCAGACGTTTCGAAATCCGGTTGCTACCGGCGATTGTGGTATTTCTGAAGAGCGGATTCTCCGATGCCTTCTTCAGATCGGTGAGGCTTGTTGTCGTTCTTCGCCGAATCTTCGGCCGGATTTCAGGGAACTGATTGCTCAGATTGAAGAAATCGGAAGGATTGAGATGGATTAA 1074 49.35 MERMSGFSTLMRPCFLIFLTTQTMVMGEMMTKGSQQYFTNLRSGARWRTKDYESSETLLSKNHHIHNPSSNKNKKTDHTPPPPELTTFEGGEDLTIDEILEAPGEVIGKSHYGTLYKATLQSTQTTRLLRFLRPAVGGGDDNHDVVRFLGSIRHRNLVPLLGFYAGGRGEKLLVHPFYEQGNLAEFIRVDETERKNWEIIYKISIGVAKALHHLHNGLQKPIPHGNLNSNNILLDQNLDPHVSDFGLHLLLNAVATREMLQVSAASGYKAPELIKMTDADERTDVYSYGKILLELLSTKEQTFRNPVATGDCGISEERILRCLLQIGEACCRSSPNLRPDFRELIAQIEEIGRIEMD 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5067947 5088691 - Lsi09G004820.1 Lsi09g00482 670095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00482 357 Gene3D Transferase(Phosphotransferase) domain 1 96 357 - -
Lsi09g00482 357 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 61 305 - -
Lsi09g00482 357 Pfam Protein tyrosine and serine/threonine kinase 105 347 IPR001245 GO:0004672|GO:0006468
Lsi09g00482 357 MobiDBLite consensus disorder prediction 58 89 - -
Lsi09g00482 357 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 61 305 - -
Lsi09g00482 357 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 315 352 - -
Lsi09g00482 357 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 315 352 - -
Lsi09g00482 357 SUPERFAMILY Protein kinase-like (PK-like) 104 350 IPR011009 -
Lsi09g00482 357 ProSiteProfiles Protein kinase domain profile. 101 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00482 Lsi-Chr9:5067947 Lsi02g02066 Lsi-Chr2:26822626 4.01E-51 dispersed
Lsi07g00112 Lsi-Chr7:1233110 Lsi09g00482 Lsi-Chr9:5067947 2.12E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83882 PF07714 PK_Tyr_Ser-Thr 4.30E-26 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00482 - - csv:101217438 469.544