Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00498 ATGTTGATGGCTCAAAAGCTTCATTTTTCCATCATTCTAATTTCTTTGTTTATCCTCTTATCAATTTCCCTATCTTTTTCGACCAAACCTAACAACAATGCCATAGATTTATGGTGCAGCCGAATGCCATATCCCGACGTTTGCAAACACTTCTTCAATGGCCAATTCGACCCGAAAAAACTTTCAGAATTCAAAAAAACATCTTTCAAAATCGCCATGGAAAGAGCTATAAGAGCTGAAACACTCACAAAAGAGTTAGGCAAAAAATGTCGTAACCAAAAAGAAAGAGTTGCATGGGCTGATTGTTTGGAGCTTTACCAAACCACAATCTTCCACCTCAACAAAACCTTCTCTGACGAATCTTGCTCCGACTTCGACATCCAAACATGGCTCAGCTCTGCCTTGACCAACCTCGACACATGTCGTGTCGGGTTCGTCGACCTTGGGATCAAGGATTACGACGTTGTTTTCCCTTTTTTGGCAAATAACAACGTCACGAAGCTTATAAGCAATAGTTTGGCAATGAATAACTGCTCTGAGAGTGATGTGGGGTATAAGAATAATGAAGGGTTTCCAAAGTGGCTTCGGGGTGGGGATCGGCGGTTGTTGCAAGCGGCGGAGCCTAAGGCGGATTTGGTGGTGGCGCAAGACGGGTCAGGGAATTATAAGACGGTGCAAGCGGCGGTGGACGCGGCGGGAAAGAGGAAAGGGAGTGGGAGATTTGTGATACATATAAAGAGAGGAGTTTATAAGGAGAATGTAGTGATAAAGGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGGTATACAATTATTAGTGGGAGTAAAAGTGTTGGTGGTGCTGTGACCGGTGAACGTTTCATTGCCCGTGGCATAACATTCCGCAACACCGCCGGACCCGAAAACCACCAAGCAGTAGCCCTCCGATCAGGCTCCGATCTCTCGGTCTTCTTCCGATGCGGTTTCGAGGGATACCAAGACACTCTCTACGTCCATTCACAAAGACAATTCTATAGAGAATGCTACATTTACGGCACAGTCGATTTCATCTTTGGCAACGCCGCCGTGGTTCTCCAGAACTGCATGATCTACGCAAGAAAACCTATCCCAGGTCAACAATGCGTCGTCACGGCCCAAGGCCGAACCGACCCAAACCAAAACACGGGGATCTCAATCCACAACTCGAGGGTGATGGCGGCTGACGACTTGAAACCGGTTCTAGGGTCAGTTAGAACCTACTTGGGGAGGCCATGGAAGGAGTACTCTCGCACTGTTTACTTGCAAAACTTCATGGATAGCTTGGTGAACCCAGCAGGATGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTACGGAGAGTTTAAGAATTTTGGGCCTGGTTCTTCTACCGCTAACAGAGTCAAATGGAAGGGTTATAGAGTGATAACAAGTGCCACTGAAGCAGCTAAATTTACTGTTGGGAATTTTATTGCTGGAACATCATGGCTGCCTGGAACTGGAGTGCCATTTACTGCTGGGCTTTGA 1536 45.96 MLMAQKLHFSIILISLFILLSISLSFSTKPNNNAIDLWCSRMPYPDVCKHFFNGQFDPKKLSEFKKTSFKIAMERAIRAETLTKELGKKCRNQKERVAWADCLELYQTTIFHLNKTFSDESCSDFDIQTWLSSALTNLDTCRVGFVDLGIKDYDVVFPFLANNNVTKLISNSLAMNNCSESDVGYKNNEGFPKWLRGGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAGKRKGSGRFVIHIKRGVYKENVVIKVKNLMLVGDGLRYTIISGSKSVGGAVTGERFIARGITFRNTAGPENHQAVALRSGSDLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVLGSVRTYLGRPWKEYSRTVYLQNFMDSLVNPAGWLEWSGNFALNTLYYGEFKNFGPGSSTANRVKWKGYRVITSATEAAKFTVGNFIAGTSWLPGTGVPFTAGL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5184085 5188944 - Lsi09G004980.1 Lsi09g00498 670111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00498 511 PANTHER PECTINESTERASE 8 510 - -
Lsi09g00498 511 SUPERFAMILY Pectin lyase-like 208 510 IPR011050 -
Lsi09g00498 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 178 IPR035513 -
Lsi09g00498 511 Gene3D - 205 511 IPR012334 -
Lsi09g00498 511 SMART PMEI_2 30 175 IPR006501 GO:0004857
Lsi09g00498 511 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
Lsi09g00498 511 CDD PMEI-like_3 37 177 - -
Lsi09g00498 511 Pfam Pectinesterase 211 496 IPR000070 GO:0030599|GO:0042545
Lsi09g00498 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 178 IPR035513 -
Lsi09g00498 511 Pfam Plant invertase/pectin methylesterase inhibitor 34 175 IPR006501 GO:0004857
Lsi09g00498 511 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Lsi09g00498 511 PANTHER PECTINESTERASE 8 510 - -
Lsi09g00498 511 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01321 Lsi-Chr5:20974152 Lsi09g00498 Lsi-Chr9:5184085 9.40E-98 dispersed
Lsi05g01942 Lsi-Chr5:26579296 Lsi09g00498 Lsi-Chr9:5184085 0 dispersed
Lsi07g00641 Lsi-Chr7:6839640 Lsi09g00498 Lsi-Chr9:5184085 2.59E-144 dispersed
Lsi09g00023 Lsi-Chr9:197201 Lsi09g00498 Lsi-Chr9:5184085 1.02E-143 dispersed
Lsi09g00498 Lsi-Chr9:5184085 Lsi02g02434 Lsi-Chr2:30889968 1.98E-145 dispersed
Lsi09g00498 Lsi-Chr9:5184085 Lsi09g00673 Lsi-Chr9:7603919 1.70E-162 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00498 K01051 - csv:101216005 903.279