Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00501 ATGTATTGGCCCTCTATAAAACAAAGCTTAAGGCTCCTCAAAATTTCATTGTCAAGAGAAATGGCTTTCGACAAAGCACTGCCCTATATTCTCCTCGCCACCATGCTGATCGCGGCCGGGCCAACGGCAGCGCAGTTGAGCCCGACGTTCTACAACACTACATGCCCCAACTTGTCCTCCATTGTAGAAGACGTAGTTAGACAAGCTCTCCAAACCGATGCCCGAGCAGGCGCAAAACTCATTCGCTTTCATTTCCACGATTGTTTTGTCAATGGGTGTGATGGGTCTGTTCTACTGGAAGATTCAGTTGCAGACAGCATAGACAGTGAGCAAAACGCACGGGGAAATGAAGGAATACAAGGCCAAAATATTGTCGCCGACATCAAAACAGCGGTTGAAAATGCTTGTCCAAACCTCGTCTCCTGTGCTGACATCTTGGCCATTGCATCTAATTCATCCGTCGTCTTGGCAGGAGGAACGAGTTGGGAGGTTCAGCTAGGAAGAAGAGACAGTCTAATAGCAAATAGATCCGGAGCTGAAAGCAATCTTCCAAGTCCTTTTGAACCTCTTGCAAATCTTACTGTCAAGTTTGCAAATGTTGGTCTTGATTCTACTGATCTTGTCTCTTTATCTGGAGCGCACACGTTCGGTCGTTCAAGATGTCAATTCTTTCAAGGGCGATTGAATGACTTTAACAGAACAGGAATGCCAGATCCGAGTCTAGACCCAATCTACAGAGACATCCTTTTGGAGGCATGTCCTCAAGGCGGAGACAACAACCGGGTCAACCTGGACCCGACAACTCCTGACGAATTCGACAACAACTATTTCACCAATCTCCAAGGCAACCGTGGGCTTCTCACCAGCGATCAAGTGCTGTTCTCCCCTCCCGACACCGCCACCGCCGGTGACGTGAACCGCTTCGCAGCCAGCCAAGAAGTGTTCTTTGATGCCTTTGGAGCCTCCATGATTAAGATGGGAAATATTAGGCCTTTGACTGGAAATGATGGGGAGATTCGTTTAACTTGTTCTAGGATTAATCCTTTGCCTGCTGTTGCTGATATGTAA 1068 47.66 MYWPSIKQSLRLLKISLSREMAFDKALPYILLATMLIAAGPTAAQLSPTFYNTTCPNLSSIVEDVVRQALQTDARAGAKLIRFHFHDCFVNGCDGSVLLEDSVADSIDSEQNARGNEGIQGQNIVADIKTAVENACPNLVSCADILAIASNSSVVLAGGTSWEVQLGRRDSLIANRSGAESNLPSPFEPLANLTVKFANVGLDSTDLVSLSGAHTFGRSRCQFFQGRLNDFNRTGMPDPSLDPIYRDILLEACPQGGDNNRVNLDPTTPDEFDNNYFTNLQGNRGLLTSDQVLFSPPDTATAGDVNRFAASQEVFFDAFGASMIKMGNIRPLTGNDGEIRLTCSRINPLPAVADM 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5237688 5241743 + Lsi09G005010.1 Lsi09g00501 670114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00501 355 PRINTS Plant peroxidase signature 263 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Plant peroxidase signature 120 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Plant peroxidase signature 279 296 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Plant peroxidase signature 139 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Plant peroxidase signature 55 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Plant peroxidase signature 79 99 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Plant peroxidase signature 158 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Plant peroxidase signature 321 334 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Plant peroxidase signature 205 217 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 Pfam Peroxidase 62 301 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PANTHER PEROXIDASE 58 37 347 - -
Lsi09g00501 355 PRINTS Haem peroxidase superfamily signature 265 280 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Haem peroxidase superfamily signature 77 91 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Haem peroxidase superfamily signature 140 157 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Haem peroxidase superfamily signature 206 221 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 PRINTS Haem peroxidase superfamily signature 158 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 ProSiteProfiles Plant heme peroxidase family profile. 45 347 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 CDD secretory_peroxidase 45 346 IPR033905 GO:0004601|GO:0042744
Lsi09g00501 355 Gene3D - 50 347 - -
Lsi09g00501 355 PANTHER PEROXIDASE 72-RELATED 37 347 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 SUPERFAMILY Heme-dependent peroxidases 45 348 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi09g00501 355 Gene3D Peroxidase, domain 2 184 326 - -
Lsi09g00501 355 ProSitePatterns Peroxidases proximal heme-ligand signature. 206 216 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00501 Lsi-Chr9:5237688 Lsi10g01002 Lsi-Chr10:14323027 1.19E-144 dispersed
Lsi10g00994 Lsi-Chr10:14259277 Lsi09g00501 Lsi-Chr9:5237688 2.12E-50 dispersed
Lsi10g01503 Lsi-Chr10:19247609 Lsi09g00501 Lsi-Chr9:5237688 1.31E-78 dispersed
Lsi09g00501 Lsi-Chr9:5237688 Lsi01g00641 Lsi-Chr1:5166953 8.81E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00501 K00430 - csv:101215530 586.26