Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00520 ATGTTCTTCTGCAAAATGGCCCCTACTTCCCTTGCTTCTCGCTTCCAACAATCTGTCACCCCGATTGCACTCCGATCCTATGTCGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTCGTTGGAGCATCCATGGCCTCTAGCATCGTTACTACGACAGACCCGTCGAGTCTTATGATGGCTGCCATCGCCAATGCCTTTGCTCTGGCCTCGGCCGTTTACATTGCCGCCAACATCTCCGGTGGACACATCAACCCAGCGGTGACGTTTGGAATGGCTGTCGCCGGGCATGTCAGTGTTCCTACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCATGCATTGTTCTTAGAGCCATCATTGTTGGACAGCGCGTTACTAGCTATGCCATCGCCGAAGAGATGACTGGCTTCGGAGCGTCGCTAGTGGAAGGTCTATTGACATTTGCCTTAGTATACACCGTTTTCGCGGCCAGCGACTTGAGAAGAGGTCCGTGCAATGCGATCGGCACTGTGATGATTGGGTTGATGGCGGGAGCCAATGTGCTGGCTGCCGGGCCATTTTCTGGTGGATCGGTGAACCCGGCGTGCGCGTTCGGGTCGGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATTGGGGCGGCTATGGCGGGAATTGTTCATGATAATGTGGTTTTTCCGACTGAAAATGTAGATTCATTCAGAGGGGTTCCTGAGGTTGGTGTGGTGTAA 771 53.05 MFFCKMAPTSLASRFQQSVTPIALRSYVAEFISTFFYVFSVVGASMASSIVTTTDPSSLMMAAIANAFALASAVYIAANISGGHINPAVTFGMAVAGHVSVPTALFYWFAQMLASVMACIVLRAIIVGQRVTSYAIAEEMTGFGASLVEGLLTFALVYTVFAASDLRRGPCNAIGTVMIGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAAMAGIVHDNVVFPTENVDSFRGVPEVGVV 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5432051 5433270 + Lsi09G005200.1 Lsi09g00520 670133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00520 256 SUPERFAMILY Aquaporin-like 19 243 IPR023271 -
Lsi09g00520 256 Pfam Major intrinsic protein 23 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00520 256 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00520 256 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00520 256 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00520 256 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00520 256 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00520 256 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi09g00520 256 PANTHER AQUAPORIN TIP5-1-RELATED 10 252 - -
Lsi09g00520 256 Gene3D Glycerol uptake facilitator protein. 10 247 IPR023271 -
Lsi09g00520 256 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Lsi09g00520 256 PANTHER AQUAPORIN-8 10 252 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00431 Lsi-Chr9:4593972 Lsi09g00520 Lsi-Chr9:5432051 7.36E-62 dispersed
Lsi09g00520 Lsi-Chr9:5432051 Lsi10g01268 Lsi-Chr10:16972498 5.30E-31 dispersed
Lsi09g00520 Lsi-Chr9:5432051 Lsi03g01989 Lsi-Chr3:31267990 4.77E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00520 K09873 - csv:101214078 430.254