Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00535 | ATGATTGCCGGGCTTTACTTTTTTGATCATAGTGTTGCTTCTCAATTGGCACAACAAAAGGAGTTTAATCTTAAGAATCCTTCAGCATATCACTATGACATCTTCTTGCTTGGATTTATGACTTTACTTTGTGGATTACTTGGGCTTCCTCCTTCAAATGGGGTTTTACCACAGTCTCCAATGCATACTAAAAGCCTTGCAGTTCTTAAGAGGCAGATGGATGTAGTGGTGAAAGAATTGGAAGATTTGAAGGAGGCAGTTATGAAAGAAGACAACAACAACAAAGATAATGAAAATGAAGAAGAGAAATTTGGTCATCTTGAGAAGCACATTGATTCATATCTTCCAGTTAGAGTAAATGAGCAAAGAGTGAGTAATCTGCTACAGTCAATCCTAGTGGCTGCATTAATTTTTGCAATACCATTGGTCAAGAAGATCCCAACATCTGTGCTTTGGGGATATTTTGCTTATATGGCTATTGATAGTCTTCCTGGAAATCAATTTTGGGAAAGGATTTTGCTCCTCTTCGTCATGCCTAGTCGACGTTACAAGTAA | 555 | 37.84 | MIAGLYFFDHSVASQLAQQKEFNLKNPSAYHYDIFLLGFMTLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQMDVVVKELEDLKEAVMKEDNNNKDNENEEEKFGHLEKHIDSYLPVRVNEQRVSNLLQSILVAALIFAIPLVKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYK | 184 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5590499 | 5608324 | - | Lsi09G005350.1 | Lsi09g00535 | 670148 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00535 | 184 | Pfam | HCO3- transporter family | 5 | 73 | IPR011531 | GO:0006820|GO:0016021 | |
Lsi09g00535 | 184 | Pfam | HCO3- transporter family | 117 | 180 | IPR011531 | GO:0006820|GO:0016021 | |
Lsi09g00535 | 184 | PANTHER | BORON TRANSPORTER 4-RELATED | 75 | 184 | - | - | |
Lsi09g00535 | 184 | PANTHER | BORON TRANSPORTER 4-RELATED | 1 | 73 | - | - | |
Lsi09g00535 | 184 | Coils | Coil | 66 | 100 | - | - | |
Lsi09g00535 | 184 | PANTHER | ANION EXCHANGE PROTEIN | 75 | 184 | IPR003020 | GO:0005452|GO:0006820|GO:0016020 | |
Lsi09g00535 | 184 | PANTHER | ANION EXCHANGE PROTEIN | 1 | 73 | IPR003020 | GO:0005452|GO:0006820|GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g01171 | Lsi-Chr8:20326857 | Lsi09g00535 | Lsi-Chr9:5590499 | 5.58E-77 | dispersed | |
Lsi09g00535 | Lsi-Chr9:5590499 | Lsi07g00483 | Lsi-Chr7:5076049 | 2.18E-91 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00535 | K24194 | - | csv:101210964 | 266.159 |