Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00535 ATGATTGCCGGGCTTTACTTTTTTGATCATAGTGTTGCTTCTCAATTGGCACAACAAAAGGAGTTTAATCTTAAGAATCCTTCAGCATATCACTATGACATCTTCTTGCTTGGATTTATGACTTTACTTTGTGGATTACTTGGGCTTCCTCCTTCAAATGGGGTTTTACCACAGTCTCCAATGCATACTAAAAGCCTTGCAGTTCTTAAGAGGCAGATGGATGTAGTGGTGAAAGAATTGGAAGATTTGAAGGAGGCAGTTATGAAAGAAGACAACAACAACAAAGATAATGAAAATGAAGAAGAGAAATTTGGTCATCTTGAGAAGCACATTGATTCATATCTTCCAGTTAGAGTAAATGAGCAAAGAGTGAGTAATCTGCTACAGTCAATCCTAGTGGCTGCATTAATTTTTGCAATACCATTGGTCAAGAAGATCCCAACATCTGTGCTTTGGGGATATTTTGCTTATATGGCTATTGATAGTCTTCCTGGAAATCAATTTTGGGAAAGGATTTTGCTCCTCTTCGTCATGCCTAGTCGACGTTACAAGTAA 555 37.84 MIAGLYFFDHSVASQLAQQKEFNLKNPSAYHYDIFLLGFMTLLCGLLGLPPSNGVLPQSPMHTKSLAVLKRQMDVVVKELEDLKEAVMKEDNNNKDNENEEEKFGHLEKHIDSYLPVRVNEQRVSNLLQSILVAALIFAIPLVKKIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVMPSRRYK 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5590499 5608324 - Lsi09G005350.1 Lsi09g00535 670148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00535 184 Pfam HCO3- transporter family 5 73 IPR011531 GO:0006820|GO:0016021
Lsi09g00535 184 Pfam HCO3- transporter family 117 180 IPR011531 GO:0006820|GO:0016021
Lsi09g00535 184 PANTHER BORON TRANSPORTER 4-RELATED 75 184 - -
Lsi09g00535 184 PANTHER BORON TRANSPORTER 4-RELATED 1 73 - -
Lsi09g00535 184 Coils Coil 66 100 - -
Lsi09g00535 184 PANTHER ANION EXCHANGE PROTEIN 75 184 IPR003020 GO:0005452|GO:0006820|GO:0016020
Lsi09g00535 184 PANTHER ANION EXCHANGE PROTEIN 1 73 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01171 Lsi-Chr8:20326857 Lsi09g00535 Lsi-Chr9:5590499 5.58E-77 dispersed
Lsi09g00535 Lsi-Chr9:5590499 Lsi07g00483 Lsi-Chr7:5076049 2.18E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00535 K24194 - csv:101210964 266.159