Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00539 ATGGAGGAGAAAGAGGAAGGAGTGGATTTCGGGTTTGCAGTAAAAGTGAGCCAAGCTGCAGAGAGCTTCGGGATGATGGATTCAAGACCTGAAAATTCAAGCACAGATGGTGAGACGCCGCCGCAGCAGCCGCCGGCGAGTGTTCCAATGGCGGCGGCTAAAGATGGGAAAAAGAAAAGAGGGAGACCGAGAAAGTACGGTCCCGATGGGACTGTAGCTCCAACATTGTCACCAATGCCGATTTCGTCATCGATTCCGCTGACCGGAGAATTTCCGGGTTGGAAAAGAGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGCGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTAATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTCATGTCATTTTCTCAACAAGGATCTCGGGCGATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTTACACTTCGACAGTCAACATCTTCTGGGGGTACTTTGACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCTGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGTGGAGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAAGAAGAGTAGGATGGAACCTACATCGAACGCAATTTTGCCTCCTGCCAATGTTCTTTCTGGCGAAGGGACGAAGGAAGTATTTGGAGGAGTGAAGCCCATAGTCACATCGACTCTAATTGGAGATAAAGCAGCTTCTTTAGACCAAACTTCGGCTTTTAAAACTTCACAAGTCAACGACAAATCACCTTTTCCAAAAGAATCAAGAGGTGTCCTCAATCATTCAAACCATGAGGTTTCTTGTTAA 1008 47.52 MEEKEEGVDFGFAVKVSQAAESFGMMDSRPENSSTDGETPPQQPPASVPMAAAKDGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFAYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPKKSRMEPTSNAILPPANVLSGEGTKEVFGGVKPIVTSTLIGDKAASLDQTSAFKTSQVNDKSPFPKESRGVLNHSNHEVSC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5661639 5668402 + Lsi09G005390.1 Lsi09g00539 670152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00539 335 ProSiteProfiles PPC domain profile profile. 125 264 IPR005175 -
Lsi09g00539 335 MobiDBLite consensus disorder prediction 21 99 - -
Lsi09g00539 335 MobiDBLite consensus disorder prediction 27 41 - -
Lsi09g00539 335 MobiDBLite consensus disorder prediction 303 335 - -
Lsi09g00539 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Lsi09g00539 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 321 IPR039605 GO:0003680
Lsi09g00539 335 CDD DUF296 129 243 IPR005175 -
Lsi09g00539 335 MobiDBLite consensus disorder prediction 303 317 - -
Lsi09g00539 335 MobiDBLite consensus disorder prediction 243 272 - -
Lsi09g00539 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 321 - -
Lsi09g00539 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 256 - -
Lsi09g00539 335 Gene3D - 130 260 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01307 Lsi09g00539 CCT
Lsi05g01307 Lsi09g00539 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01258 Lsi-Chr1:10798017 Lsi09g00539 Lsi-Chr9:5661639 6.94E-13 dispersed
Lsi05g01962 Lsi-Chr5:26747752 Lsi09g00539 Lsi-Chr9:5661639 3.07E-90 dispersed
Lsi09g00368 Lsi-Chr9:3836578 Lsi09g00539 Lsi-Chr9:5661639 4.54E-89 dispersed
Lsi09g00539 Lsi-Chr9:5661639 Lsi11g00064 Lsi-Chr11:740003 1.32E-71 dispersed
Lsi09g00539 Lsi-Chr9:5661639 Lsi05g01307 Lsi-Chr5:20815809 1.24E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00539 - - csv:101211908 582.793