Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00549 ATGTCCGAATCATCTCCTTCCGATCATGATCCCTCTCCCGCCGCCGCCAAGCTCCGCAAGATCCCTCACATCCCCGTTCGCCGCGATTCCATACCCAATGCCGGAGACTCCGATTCCGATCATGAACATGACCTTCCCGAGGATCGCCATCTTCAAACTGACGATTCCTCCATCCTTATGGCCTCCTCTCTTGGCTTGAACCACATTCGGACGCGGTCTGCTCCTTTACCGCAACGGACCTCTGCTGTTGGCACGCCTTCCAATTTGGGAGATAATTCCAGAAATAATGCCACCAGCGGGACCGAGTTTGAGCCAAAAGTTTCCTCCACTGAACAAGGGAAAAAAGTTCTGTGGAGTCAATCGAAATCGTTCAGATATCCGACAGCTCTGAATCATGATCTTGAGGGTACTCATGTAGCGTTTGGAAAGGAAATTCAGTCTCCACGGTTCCGTGCCATACTGCGTGTTACTAGTGGAAGAAAGAAGAGAACTCCGGATATCAAGAGCTTCTCTCACGAGCTCAATTCCAAGGGAGTTCGCCCTTTTCCACTTTGGAAACCTCGGGCATTTGGACATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTTAATTACGAACTGGGCATTTTTGCTGGAGATCTCGTAGATATACTTGAAAAAACAGACGAGTCTCAGCCTGAACTAAAAGAGGGTTTGGAGGACTTATTGGTGGTTGCTCGGAAATGTGCGACAATGTCACCTACTGAATTCTGGACAAAAGGTGAAGAGATTGTCCAAAATCTAGATGACCGGCGGCAGGAGCTGTCATTAGGGATTCTTAAGCAAGCCCATACCCGCCTTCTCTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAGCACATTTTGGGTCTTCATCAACTTAGTGATCTAGGAATTTATCCAGAGAAACTTAGGCAGCTAGAACAACTTGAGTTTGGTGATCCATTGACTGTGAAAGAAGATATTGAGCAGCGGCTAAAGTTGGATGGTAAGGATCAAGCCAGTCGAATGGTGAAGCAAGATTTAGGCCAGGGTTTTAGTAATAGTGCTGGAAATGTTGAGCTGGACTCTGCCTTAAGCATTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGCAAAGACTCTGACTCTACTGGAACACCTTCCAAGGATAAACTTGAACTGTTGCATGTACATGAAGCTAAGACTGGGAGCAATAACCAATTAGATACACCATCTAGTCATATTGCGCATTCAGAAGCACCTCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTATCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCGACCATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAACGGGTTGCTACTGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGTAGTGATGTTTCCTGCGGAAATTTTGATACCGTTAAGGTTTCTGCATCAAGTATGCAAGAAGAGGTTTTTGAGCTGTCATCTAAAGGAATCAGTTTGTCATGTCGAAATTCTGAAGATCTGCTTGATTCCCTCCCTGTTACTGGCAACTCCTCCTTCATGGAAAGTCAGGATACTTTTCCTGATTCATCATACAATCGACCATTTATTTTCACACCAGATCACAGTACAAAATCAACGTCAGCTGGAACTTTAACACCAAGATCACCTCTTTTAACACCCAGATCCAGCCAGATTGAATTGTTGTTGCATGGACGAAAAGCAATATCTGAACTTGAAAACTATCAGCAGATTTTCAAATTATTGGATATTGTTCGTTCCATTGCAAACGTTAACAACTCTGGATACGGTGCATTGGAGTCCATGCTTGATCGATTAGAGGACCTTAAATATGCAATCCAGGATAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATATGTGCATCTTTGTGGGCAAATTGAAGATGATAAAGTAGACTCTTCACATGGCATGGTTGATGAAGAGAGTTCGGTGGAAGATGATATTGTTCGTAGTTTGCGTGCAAGTCCTGTTAATACATGTTCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATTAAACCAATTAGTAGAGGGGCATATGGCCGAGTTTTTCTTGCCAGAAAAACAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGTAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGTGGTGATATTTATTCCTTGCTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGTATTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAACCAGATAACTTACTGATTGGTCAAGATGGTCACATTAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGAACTGCTTCACTTGGAGACAATGGTCCAACATCTCAATCTTTGTCAAAACGAGAACACAGACAAAAGCATTCAGTAGTTGGTACTCCAGATTATTTGGCTCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCAGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGACTACCGCCGTTCAATGCAGAAAATCCACAGCAAATTTTTGACAATATCATTAACAGAGACATACCATGGCCCAAGGTGCCTGACGAGATGAGTTATGAAGCCCATGATTTGATTGACAAATTGCTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACTGGAGCCAGAGAGATTGGAACCGTTTTCTTCTGTCAGGTGAAGGAGCATCCTTTCTTCAAAGATATTAACTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACAGGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGAGGATTTTAATTGTGGAAGTGACTTTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATTTAGTAACCTACAAGATGAAGACGGAGATGAATGTGGTAGTTTGGCTGACTTCTGTACACCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAACTGGCTTCCATCAATTATGATTTGGTTGTGAAGAGCAGTCAAAACTCACCAGATGTATCAAAACCATCCATTCCATGA 3540 42.29 MSESSPSDHDPSPAAAKLRKIPHIPVRRDSIPNAGDSDSDHEHDLPEDRHLQTDDSSILMASSLGLNHIRTRSAPLPQRTSAVGTPSNLGDNSRNNATSGTEFEPKVSSTEQGKKVLWSQSKSFRYPTALNHDLEGTHVAFGKEIQSPRFRAILRVTSGRKKRTPDIKSFSHELNSKGVRPFPLWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDILEKTDESQPELKEGLEDLLVVARKCATMSPTEFWTKGEEIVQNLDDRRQELSLGILKQAHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKLRQLEQLEFGDPLTVKEDIEQRLKLDGKDQASRMVKQDLGQGFSNSAGNVELDSALSIDSSTSMYRMASWKKLPSAAEKNRKDSDSTGTPSKDKLELLHVHEAKTGSNNQLDTPSSHIAHSEAPPKEQKVSWGIWGYHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLERVATALEKILESWTPKSTPSSDVSCGNFDTVKVSASSMQEEVFELSSKGISLSCRNSEDLLDSLPVTGNSSFMESQDTFPDSSYNRPFIFTPDHSTKSTSAGTLTPRSPLLTPRSSQIELLLHGRKAISELENYQQIFKLLDIVRSIANVNNSGYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKVDSSHGMVDEESSVEDDIVRSLRASPVNTCSKDRTSIEDFEIIKPISRGAYGRVFLARKTATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSISGTASLGDNGPTSQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGLPPFNAENPQQIFDNIINRDIPWPKVPDEMSYEAHDLIDKLLTENSVQRLGATGAREIGTVFFCQVKEHPFFKDINWETLARQKAMFIPSAEPQDTSYFMSRYIWNPEEDFNCGSDFDDHDLTDTCSSSSFSNLQDEDGDECGSLADFCTPALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDVSKPSIP 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5801276 5817320 + Lsi09G005490.1 Lsi09g00549 670162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00549 1179 ProSiteProfiles Protein kinase domain profile. 761 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00549 1179 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Lsi09g00549 1179 MobiDBLite consensus disorder prediction 33 54 - -
Lsi09g00549 1179 Gene3D Phosphorylase Kinase; domain 1 759 1084 - -
Lsi09g00549 1179 MobiDBLite consensus disorder prediction 922 936 - -
Lsi09g00549 1179 MobiDBLite consensus disorder prediction 432 452 - -
Lsi09g00549 1179 SUPERFAMILY Protein kinase-like (PK-like) 758 1091 IPR011009 -
Lsi09g00549 1179 ProSiteProfiles AGC-kinase C-terminal domain profile. 1058 1159 IPR000961 GO:0004674|GO:0005524|GO:0006468
Lsi09g00549 1179 Pfam Protein kinase domain 761 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00549 1179 PANTHER SERINE/THREONINE PROTEIN KINASE IRE-RELATED 13 1179 - -
Lsi09g00549 1179 SMART serkin_6 761 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00549 1179 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 1179 - -
Lsi09g00549 1179 CDD STKc_MAST_like 767 1062 - -
Lsi09g00549 1179 MobiDBLite consensus disorder prediction 71 112 - -
Lsi09g00549 1179 MobiDBLite consensus disorder prediction 922 947 - -
Lsi09g00549 1179 MobiDBLite consensus disorder prediction 1 54 - -
Lsi09g00549 1179 Gene3D Transferase(Phosphotransferase) domain 1 845 1075 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00005 Lsi-Chr2:53420 Lsi09g00549 Lsi-Chr9:5801276 2.24E-39 dispersed
Lsi02g00006 Lsi-Chr2:71414 Lsi09g00549 Lsi-Chr9:5801276 1.32E-32 dispersed
Lsi02g00007 Lsi-Chr2:88882 Lsi09g00549 Lsi-Chr9:5801276 7.55E-127 dispersed
Lsi06g01506 Lsi-Chr6:25490687 Lsi09g00549 Lsi-Chr9:5801276 2.02E-62 dispersed
Lsi09g00549 Lsi-Chr9:5801276 Lsi09g01229 Lsi-Chr9:19708524 2.98E-82 dispersed
Lsi10g01273 Lsi-Chr10:17000650 Lsi09g00549 Lsi-Chr9:5801276 6.00E-32 dispersed
Lsi09g00549 Lsi-Chr9:5801276 Lsi06g00299 Lsi-Chr6:3436514 1.02E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83886 PF00069 Pkinase 2.40E-62 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00549 - - csv:101210442 2087.38