Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00568 ATGTCTTCTTCTCCATTTCTCTCTCTCCCTTTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCCCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGGCCTTCAACTTCCTTCGCGCCATTTTCGACTTCACCAGCTTTCAAGGTCTTTAATGGTCCAATCAAGAGTAGTAGGAGTTCTACTTTCGCCTATGTCACCGGCCCTGCCTCGGACCCTAATGTCAGCGAGTCCGACCCCAAGGTGGACGATGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTTGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTGGTTTCTTTGCTTACTCTTGTTTGCTGCAGTACCTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCAAAACCTGGCTCTCTGTGGAGGCTTCTGAGTACAGTTGGAATCTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCATTCTCTGAGGCAAGCAACTCTTCACCAAGTACAACTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCTCATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCAGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGAATATCACTTGGGACTTTTAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTAGTAAATTCATTTGGAGATATTCGTCGAACTTTTGCTGCCGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAGATGAATTTAGATATAAGTTGTTATTCTCTAGCGATGCTGATGAAAATAGTCGAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCCAGCAACATTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTATCCTTTGAGACCGGACGTTAACGTTCTTACTAGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCACTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGACAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTCTCAATAGTGAATCAAGAACCCGTTCTTTTTTCGGTGTCTGTCGGAGAGAATATTGCATATGGACTTCCAGATGATAATGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTTAGCGGTGGCCAGCGACAGAGAATTGCAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTGGATGAGGCGACCAGTGCACTAGATGCAGTTAGTGAGCGACTGGTCCAGGATGCTCTAAATCAACTAATGAAGGGAAGGACAACATTAGTGATCGCACATCGATTAAGTACGGTTCAAAATGCTCATCAAATTGCATTTTGTTCCGATGGAAAAATTGTAGAGTTGGGAACTCATTTGGAACTACTGGCTCAGAAAGGTCGGTATGCTTCATTAGTCAGCACACAAAGGCTGGCATTTGAGTGA 2073 42.6 MSSSPFLSLPFTLKPSHFPNHTPKLPNSSLSLLRPSTSFAPFSTSPAFKVFNGPIKSSRSSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFLRLLTKHKLRLLVSLLTLVCCSTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEASNSSPSTTVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTFKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNSFGDIRRTFAAVERINSVLNEEVDEALAYGLEKEMQQDEFRYKLLFSSDADENSRVKTQYMAALKSSSNIINLAWSGDICLEDVCFSYPLRPDVNVLTSLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKTGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNQLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLAQKGRYASLVSTQRLAFE 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6117390 6127302 + Lsi09G005680.1 Lsi09g00568 670181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00568 690 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi09g00568 690 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 57 688 - -
Lsi09g00568 690 Gene3D ABC transporter type 1, transmembrane domain 243 392 IPR036640 GO:0005524|GO:0016021
Lsi09g00568 690 Gene3D ABC transporter type 1, transmembrane domain 94 229 IPR036640 GO:0005524|GO:0016021
Lsi09g00568 690 Pfam ABC transporter 465 615 IPR003439 GO:0005524
Lsi09g00568 690 SUPERFAMILY ABC transporter transmembrane region 101 391 IPR036640 GO:0005524|GO:0016021
Lsi09g00568 690 ProSitePatterns ABC transporters family signature. 587 601 IPR017871 GO:0005524
Lsi09g00568 690 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 57 688 IPR039421 -
Lsi09g00568 690 Pfam ABC transporter transmembrane region 113 227 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi09g00568 690 Pfam ABC transporter transmembrane region 246 361 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lsi09g00568 690 SMART AAA_5 473 667 IPR003593 -
Lsi09g00568 690 CDD ABC_MTABC3_MDL1_MDL2 446 685 - -
Lsi09g00568 690 Gene3D - 444 687 IPR027417 -
Lsi09g00568 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 437 685 IPR027417 -
Lsi09g00568 690 CDD ABC_6TM_TAP_ABCB8_10_like 120 382 - -
Lsi09g00568 690 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 446 684 IPR003439 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00568 Lsi-Chr9:6117390 Lsi03g02007 Lsi-Chr3:31464738 1.82E-74 dispersed
Lsi09g00568 Lsi-Chr9:6117390 Lsi04g01761 Lsi-Chr4:24854240 3.77E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00568 K05657 - csv:101211598 1174.84