Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00568 | ATGTCTTCTTCTCCATTTCTCTCTCTCCCTTTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCCCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGGCCTTCAACTTCCTTCGCGCCATTTTCGACTTCACCAGCTTTCAAGGTCTTTAATGGTCCAATCAAGAGTAGTAGGAGTTCTACTTTCGCCTATGTCACCGGCCCTGCCTCGGACCCTAATGTCAGCGAGTCCGACCCCAAGGTGGACGATGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTTGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTGGTTTCTTTGCTTACTCTTGTTTGCTGCAGTACCTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCAAAACCTGGCTCTCTGTGGAGGCTTCTGAGTACAGTTGGAATCTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCATTCTCTGAGGCAAGCAACTCTTCACCAAGTACAACTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCTCATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCAGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGAATATCACTTGGGACTTTTAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTAGTAAATTCATTTGGAGATATTCGTCGAACTTTTGCTGCCGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAGATGAATTTAGATATAAGTTGTTATTCTCTAGCGATGCTGATGAAAATAGTCGAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCCAGCAACATTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTATCCTTTGAGACCGGACGTTAACGTTCTTACTAGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCACTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGACAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTCTCAATAGTGAATCAAGAACCCGTTCTTTTTTCGGTGTCTGTCGGAGAGAATATTGCATATGGACTTCCAGATGATAATGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTTAGCGGTGGCCAGCGACAGAGAATTGCAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTGGATGAGGCGACCAGTGCACTAGATGCAGTTAGTGAGCGACTGGTCCAGGATGCTCTAAATCAACTAATGAAGGGAAGGACAACATTAGTGATCGCACATCGATTAAGTACGGTTCAAAATGCTCATCAAATTGCATTTTGTTCCGATGGAAAAATTGTAGAGTTGGGAACTCATTTGGAACTACTGGCTCAGAAAGGTCGGTATGCTTCATTAGTCAGCACACAAAGGCTGGCATTTGAGTGA | 2073 | 42.6 | MSSSPFLSLPFTLKPSHFPNHTPKLPNSSLSLLRPSTSFAPFSTSPAFKVFNGPIKSSRSSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFLRLLTKHKLRLLVSLLTLVCCSTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEASNSSPSTTVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTFKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNSFGDIRRTFAAVERINSVLNEEVDEALAYGLEKEMQQDEFRYKLLFSSDADENSRVKTQYMAALKSSSNIINLAWSGDICLEDVCFSYPLRPDVNVLTSLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKTGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNQLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLAQKGRYASLVSTQRLAFE | 690 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6117390 | 6127302 | + | Lsi09G005680.1 | Lsi09g00568 | 670181 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00568 | 690 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 113 | 374 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lsi09g00568 | 690 | PANTHER | ABC TRANSPORTER B FAMILY MEMBER 28 | 57 | 688 | - | - | |
Lsi09g00568 | 690 | Gene3D | ABC transporter type 1, transmembrane domain | 243 | 392 | IPR036640 | GO:0005524|GO:0016021 | |
Lsi09g00568 | 690 | Gene3D | ABC transporter type 1, transmembrane domain | 94 | 229 | IPR036640 | GO:0005524|GO:0016021 | |
Lsi09g00568 | 690 | Pfam | ABC transporter | 465 | 615 | IPR003439 | GO:0005524 | |
Lsi09g00568 | 690 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 391 | IPR036640 | GO:0005524|GO:0016021 | |
Lsi09g00568 | 690 | ProSitePatterns | ABC transporters family signature. | 587 | 601 | IPR017871 | GO:0005524 | |
Lsi09g00568 | 690 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 57 | 688 | IPR039421 | - | |
Lsi09g00568 | 690 | Pfam | ABC transporter transmembrane region | 113 | 227 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lsi09g00568 | 690 | Pfam | ABC transporter transmembrane region | 246 | 361 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Lsi09g00568 | 690 | SMART | AAA_5 | 473 | 667 | IPR003593 | - | |
Lsi09g00568 | 690 | CDD | ABC_MTABC3_MDL1_MDL2 | 446 | 685 | - | - | |
Lsi09g00568 | 690 | Gene3D | - | 444 | 687 | IPR027417 | - | |
Lsi09g00568 | 690 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 437 | 685 | IPR027417 | - | |
Lsi09g00568 | 690 | CDD | ABC_6TM_TAP_ABCB8_10_like | 120 | 382 | - | - | |
Lsi09g00568 | 690 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 446 | 684 | IPR003439 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g00568 | Lsi-Chr9:6117390 | Lsi03g02007 | Lsi-Chr3:31464738 | 1.82E-74 | dispersed | |
Lsi09g00568 | Lsi-Chr9:6117390 | Lsi04g01761 | Lsi-Chr4:24854240 | 3.77E-62 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00568 | K05657 | - | csv:101211598 | 1174.84 |