Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00576 ATGTGCAACATAGCTAATTCTGATGGGTTAAATCAGAAGTATGATCCTGAGGACAAGCATCATATTGTCCGTATTTATGATTACTTTGTATATCAACGTCATCTGTGCATTTGCTTTGAGCTGCTTGATACAAATTTGTATGAGCTTATCAAGATCAACCATTTTAGGGGGTTGTCATTGAGCATTGTTCAAATGCTGTCCAAACAGAAGATCTTATGTGGGCTTGCTCTATTAAACGATGCTGGCATTATTCATTGTGATTTAAAGCCAGAAAATATTCTTTTATGCACGAGCAGTGCGAAGCCTGCAGAAATTAAGATAATAGACTTTGGATCAGCTTGCATGGAAGACCGCACTGTTTATTCTTACATCCAGAGCCGCTACTACAGATCTCCAGAAGTCCTGCTCGGATATCAATACACTACAGCTATTGATATGTGGTCCTTTGGTTGCATAGTTGCTGAGTTGTTTCTTGGACTGCCATTATTTCCAGGGGCTTCTGAGTTTGATTTATTGAGGCGGATGATCGACATTCTTGGGGGACAGCCTCCGGATTATGTTCTGAAGGAGGCAAAACATACTAGCAAATTTTTTAAGTTTATTGGAAGTTTCCATAATGAAAATGGTGAAATTTATGCAAGTGGCCGAAGCACTTTTCAAGCATTAAAAGCAGACGAATATGAAGCTAGAGAGATGAAAAAGCCTTCAATTGGGAAAGAGTATTTCAATCGAATGGACCTCGAAGCAATTGTGACTAACTACCCTTATAGAAAGAACTTGGCTGAGGAAGATATTAGGAAAGAGAGTCAAGTACGATTGGCCTTAATTGATTTCCTTAAGGGCCTTGTGGAGTTTGATCCTGCGAAAAGGTGGTCACCTTTCCAGGCCTCCAAACACCCTTTTGTAACAGGAGAGCCTTTCACATGCCCATACACGCCTCCACCAGAGACCCGGCGTTTGCCTGTTTCACAAAACATAAAGGTGGACGACCATCATCCGGGTGGAGGGCATTGGTTTGCAGCTGGTCTCTCTCCCAATATTGCAGGTAGGAACAGAGTTCTTCAGAGCAGCCCACATTTTCAAATGGTACCATATGCCCATGCCAACAGTTATGGCAGCGTTGGAAGTCATGGTAGCTACAATGAAAGTATTGGGTTTGGAAATAGCTATGGAAGTTACGGGGACAATGGTATGCTTGCATACTATTCGCCTGTTGGTCCATCTGGAATGAATATGCATCCACAAGGAAGAATATCAGTGCATGCAAGTAGCCCAGATACTCGGCAGAGGATTTTTCAATTATCACATGGTAATGGAATTGGTGTGAGCCCATCAACTGGGAACTTTGCGCCACTGCCCCTAGGCACGAGTCCGTCGCAGTTTACTCCACCAAGCAGTTATGGTCAAGTTTCAGTGGGCTCTCCTGGACATTATGGGCCAACTTCTCCTGCAAGGAGTAGCTGTCAGGGGTCGCCCCTGGGAAAAATGGCTACAGTTGGTCAATTTAATAGAAGGAAATTTTGGGATTACTCTGGTACTCATGATGGTTCTTCATCTTCGCACTGGCAAGGGCAATCTACTGAAGGCACAAGCTACAGTCAAGCAGATGGGAACTCTTTACATGGTTGCTCACCATCTCATCTGCCACCGAGTGGCAATGCCACCGGCTGGAAGCAGCAGCAAGTAGGGAGTGGAAGCTCTGCTGGATACCCTACCATTCAGAGTATGCCAGGATCTCATTTGCCTGGTTCAAATATGCAGTTTTCACAACCAACAGACGTGGCTCGTAATAAGTCTGAATTGCCTGATCCTGGAGATTGGGATCCCAATTATAGTGATGAACTACTCCTCCAAGATGATGGTGATTCAAATGTCAGCAGCATTTCGACTGATTTTTGCAACATGCATGTGGGTTCATCAAATCCGTCTACTGGGATTGGAAGATTTAGTATGCCAAGCGCCAGTTTGAATTTAACCTCACAAAGAAAAACTGGACCTGTCCAAGCATTTCCGCATGTAGAGGTGGGTAGCCCGCCCTCAGCTCAAGATTTGCACACTGGATATGCTCGTTCCTCATCGAAGCATTCCCATCTCATGCCTCATAGTTCACACAATTCCCCAAGCCGCTTGGGACAGCAACCTGTTCAGCGGTTCAATCAAGGGAGAAGCACAAACGTTCGAGGTTACGAGTGGAACCCTGTGAAGATCCAACCACCCCTTCCCAGCTATAATTCTGGAGGTCCTCGTTCTCCTGGAAGTGGCTCCTTCAGCAGTGGCATGTCATGGGGGTTTAGAGCGAATCAGCCTGTTTCAAGCATTCCTCCAGCATCTCGTGGAAGAAAAGACTATGGGAGGATCTAG 2361 45.15 MCNIANSDGLNQKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINHFRGLSLSIVQMLSKQKILCGLALLNDAGIIHCDLKPENILLCTSSAKPAEIKIIDFGSACMEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIDILGGQPPDYVLKEAKHTSKFFKFIGSFHNENGEIYASGRSTFQALKADEYEAREMKKPSIGKEYFNRMDLEAIVTNYPYRKNLAEEDIRKESQVRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYTPPPETRRLPVSQNIKVDDHHPGGGHWFAAGLSPNIAGRNRVLQSSPHFQMVPYAHANSYGSVGSHGSYNESIGFGNSYGSYGDNGMLAYYSPVGPSGMNMHPQGRISVHASSPDTRQRIFQLSHGNGIGVSPSTGNFAPLPLGTSPSQFTPPSSYGQVSVGSPGHYGPTSPARSSCQGSPLGKMATVGQFNRRKFWDYSGTHDGSSSSHWQGQSTEGTSYSQADGNSLHGCSPSHLPPSGNATGWKQQQVGSGSSAGYPTIQSMPGSHLPGSNMQFSQPTDVARNKSELPDPGDWDPNYSDELLLQDDGDSNVSSISTDFCNMHVGSSNPSTGIGRFSMPSASLNLTSQRKTGPVQAFPHVEVGSPPSAQDLHTGYARSSSKHSHLMPHSSHNSPSRLGQQPVQRFNQGRSTNVRGYEWNPVKIQPPLPSYNSGGPRSPGSGSFSSGMSWGFRANQPVSSIPPASRGRKDYGRI 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6196172 6209083 + Lsi09G005760.1 Lsi09g00576 670189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00576 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672|GO:0006468
Lsi09g00576 786 Gene3D Transferase(Phosphotransferase) domain 1 16 303 - -
Lsi09g00576 786 MobiDBLite consensus disorder prediction 740 786 - -
Lsi09g00576 786 PANTHER DUAL SPECIFICITY PROTEIN KINASE 9 701 - -
Lsi09g00576 786 MobiDBLite consensus disorder prediction 684 714 - -
Lsi09g00576 786 MobiDBLite consensus disorder prediction 442 495 - -
Lsi09g00576 786 MobiDBLite consensus disorder prediction 512 618 - -
Lsi09g00576 786 MobiDBLite consensus disorder prediction 676 714 - -
Lsi09g00576 786 PANTHER BNAC04G29850D PROTEIN 9 701 - -
Lsi09g00576 786 SUPERFAMILY Protein kinase-like (PK-like) 19 324 IPR011009 -
Lsi09g00576 786 MobiDBLite consensus disorder prediction 512 596 - -
Lsi09g00576 786 ProSiteProfiles Protein kinase domain profile. 1 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00576 786 MobiDBLite consensus disorder prediction 746 774 - -
Lsi09g00576 786 Pfam Protein kinase domain 19 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g00576 786 SMART serkin_6 11 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00576 K18670 YAK1; dual specificity protein kinase YAK1 [EC:2.7.12.1] - csv:101210441 1517.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00266 Lsi09g00576 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00304 Lsi-Chr3:3702600 Lsi09g00576 Lsi-Chr9:6196172 2.18E-42 dispersed
Lsi08g01102 Lsi-Chr8:19685346 Lsi09g00576 Lsi-Chr9:6196172 2.68E-29 dispersed
Lsi09g00576 Lsi-Chr9:6196172 Lsi02g01406 Lsi-Chr2:19325394 1.08E-24 dispersed
Lsi01g00532 Lsi-Chr1:4350294 Lsi09g00576 Lsi-Chr9:6196172 9.91E-10 transposed
Lsi02g00438 Lsi-Chr2:3640088 Lsi09g00576 Lsi-Chr9:6196172 2.04E-23 transposed
Lsi10g01209 Lsi-Chr10:16359028 Lsi09g00576 Lsi-Chr9:6196172 5.91E-11 transposed
Lsi04g00266 Lsi-Chr4:2738810 Lsi09g00576 Lsi-Chr9:6196172 1.66E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006755 0 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83887 PF00069 Pkinase 1.70E-37 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00576 Lsi_Chr09 FPKM 13.891687 14.276706 30.4284 33.169125 36.249763 33.279213 39.25359 17.462732 16.892927 18.319027