Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00583 ATGGAAGAGGCTGGAGGATTAAGCGTTGGAGATTTTTTTCCAATGTTGAAGACGATGGACCTCCAAGGATGTCGAAAGCGTATGATGGTTCACATGAACAAGTTTTTAGATATCTTTGATAAAATGATTGAGAAGAAGATGAAGGAGCCAAAATTAGGGGAAGATATTGACATGCTTCAAAATCTTCTCAACCTTTCAAAAGAAAGTGAAGATCCCAAGTTCGATTTACAACTGATCAAGCATTTGATTTTGGTTCTATTTCCAGCTGGAACCGACACGACAACGTCAACAGTAGAATGGGCAATGGCAGAGCTTCTAAGAAACCCAAAAATGATATCAAAAGCCAAAACAGAGCTCAAACAAGAGATAGGAGAAGACAAGGCAATGGAGGAATCAGACTACTTAAGACTGCCATTTCTTCAAGCAATCATAAAAGAAACTCTAAGACTTCATCCTGCAGCTCCTCTTCTTTTGCCACATAAAGCAAGACAAGACACAGAGATCATTGGAGGCTTTGTAATTCCCAAAAATGCTCAAGTTCTTGTGAATGCTTGGAAGATTGGAAGGGACAAAAGTGTTTGGGAAGATGCTGATTTGTTTAAACCAGAGAGGTTTATAGGGTCAGAAGTTGATTATAAAGGGAGAAATTTTGAGTTGATTCCATTTGGTTCAGGAAGGAGAATTTGCCCTGGTTTGCCTTTGGCTACCAAAATGGTGCATTGGATTCTTGGTTCTTTGATTCATTCATTTCATTGGAGACTTGAAGATGGGATCAAACCTGAAACTTTGGATATGGAAGAGAAGGCTCACAAGGAGGCGAAGATGAGTAGAAAAGAATCAAAGAGTGGCTGCAGTCGCCATGTGAAATGGGATGAAGGTAATATTGGTCAAATTGAAGCAAATAAACCTGTGCGACAGAAAATTACCGAACCTAAGACGCCTTATCATCCCATGATTGATGATGATGATTCTCTATCTCCTGTGCGGGACAGGTTTGATTTGTGTGTTGGTGATGCAATGCATGCAGAAGCGATTCGAACTGCATTGAATGATGTGGCTTCCTCAAGTGGTAAAAGCAGCCAGCGATCTAGTGGTTGGACATCTTCTGAGGATGAAGCAGATGCCATGGACCAAGATGATGAAGGTCCCAATTTCCTTTCTTTGCTCATATATTTTACATCAATTGCCTAA 1191 40.39 MEEAGGLSVGDFFPMLKTMDLQGCRKRMMVHMNKFLDIFDKMIEKKMKEPKLGEDIDMLQNLLNLSKESEDPKFDLQLIKHLILVLFPAGTDTTTSTVEWAMAELLRNPKMISKAKTELKQEIGEDKAMEESDYLRLPFLQAIIKETLRLHPAAPLLLPHKARQDTEIIGGFVIPKNAQVLVNAWKIGRDKSVWEDADLFKPERFIGSEVDYKGRNFELIPFGSGRRICPGLPLATKMVHWILGSLIHSFHWRLEDGIKPETLDMEEKAHKEAKMSRKESKSGCSRHVKWDEGNIGQIEANKPVRQKITEPKTPYHPMIDDDDSLSPVRDRFDLCVGDAMHAEAIRTALNDVASSSGKSSQRSSGWTSSEDEADAMDQDDEGPNFLSLLIYFTSIA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6268074 6278038 + Lsi09G005830.1 Lsi09g00583 670196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00583 396 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 269 - -
Lsi09g00583 396 SUPERFAMILY Cytochrome P450 8 265 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 Pfam Protein phosphatase inhibitor 2 (IPP-2) 288 377 IPR007062 GO:0004864|GO:0009966|GO:0043666
Lsi09g00583 396 MobiDBLite consensus disorder prediction 351 382 - -
Lsi09g00583 396 MobiDBLite consensus disorder prediction 351 371 - -
Lsi09g00583 396 PRINTS E-class P450 group I signature 183 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS E-class P450 group I signature 141 159 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS E-class P450 group I signature 219 229 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS E-class P450 group I signature 229 252 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS E-class P450 group I signature 78 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS E-class P450 group I signature 98 124 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 Pfam Cytochrome P450 10 265 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS P450 superfamily signature 220 229 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS P450 superfamily signature 229 240 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS P450 superfamily signature 89 106 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 PRINTS P450 superfamily signature 142 153 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g00583 396 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 222 231 IPR017972 GO:0005506|GO:0016705
Lsi09g00583 396 Gene3D Cytochrome P450 1 287 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00347 Lsi-Chr9:3625622 Lsi09g00583 Lsi-Chr9:6268074 1.95E-94 dispersed
Lsi09g00583 Lsi-Chr9:6268074 Lsi05g01063 Lsi-Chr5:18135369 8.77E-101 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00583 - - bhj:120067227 493.041