Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00584 ATGGGGAATTCATTTGGGTGTTCGGCGTCAGGAGAGAGATTGGTATCGGCTGCGAGAGATGGCGACTTGGTTGAGGCTAAAATGCTTTTAGATTGCAACCCATGTCTCGCTAAATACTCCACTTTCGGTGGCCTTAATTCCCCTCTCCATTTTGCGGCTGCTAAAGGCCACAACGAGATTGTGTCCTTGTTGCTTGAAAATGGAGCTGATGTGAATTCCAGGAACTACTGTGGCCAGACAGCAGTGATGCAAGCTTGTCGATATGGGCACTGGGAAGTCGTACAAACTCTTCTAGTTTTCAGATGCAATGTAATGAGAGCAGACTACCTTAGCGGTCGGACTGCTCTCCATTTTGCAGCTGTGAATGGTCATGTGAGATGTCTAAGACTTATTGTGGCCGACTTTGTTCCTAGTGTTCCCTATGAGGCTATTAATAGTCAGACAGTTGTTAGCAGAAGTGATGGTGTTAATGTGAAGAACAGATGTGAACAAGGTGCTTTGTCCAAGTTTATAAATAAGGCAGCTGATGGTGGCATTACTGCTCTTCATATGGCAGCATTAAATGGATACTATGATTGTGTTCATCTTCTTCTTGACCTACATGCTAATGTTACAGCAGTAACATTTCATTACGGGACCTCTATGGATTTGATCGGAGCTGGAAGCACTCCATTGCATTATGCAGCTTGTGGGGGTAACTTGAAGTGCTGTCAGGCAAGATGTCTTTCGACTTTATTAATTCTCCTTGCAAGAGGTGCCTCTCGGATGACTTTGAATTGCAATGGGTGGCTTCCGTTAGATGTAGCCAGAATGTGGGGACGCCACTGGCTTGAACCTCTGCTAGCTCCCAATTCTGACTCTATAATACCAAGATTCCCCACTTCCAACCACCTATCCTTGCCTCTACAGAGTGCATTAAACATTGCCAGAGAATGCGGTTTTAAGTCTATGGGAGCAACCTCCGACGATGGGGATACCTGTGCTGTTTGTCTGGAGAGAGTATGTTCCGTGGCAGCAGAGGGATGTGGACATGAGCTTTGTGTAAGATGTGCACTCTATCTTTGTTCGACTAGCAATATCCAATCGGAAATGATTGGTTCATTGGGCTCAATTCCGTGTCCGCTTTGCAGACACGGAATTATATCTTTTGTAAAATTGTCTGGTGTTACAGCAAAAGAAAAACAACTTCATCTGTCTCTTAGCATATGCAGCCCATGCATTCTTCATACTCGTGATGCTGAAGATCAGGCTTCAACTTGTACACCAGAGATCCGTAAGAATCGTGTGGCTTCAGTTTCTTCAGATGTATTCTGCCCAGTAACTTGCAGTCCATTCCCTTCTGCTGCTATTCCTTTGTGTACATGCAATGATGGTCCATGCCCGACATTCGAGTCCCGAGATGTTGGAACAGAAGATGAATCACCCCGTCAATTGCAAACAACCCCAATAGACCAGGACAAATTGGGAGGTCCAAGGCCAGAAAGAACTAGCTGTTCAAGCATGTTTTGGGGCAGGAGAAGCTGTAGCAGGGAGAATCAATGCAATTCAGAAATAAACGCTTGA 1563 45.23 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLVFRCNVMRADYLSGRTALHFAAVNGHVRCLRLIVADFVPSVPYEAINSQTVVSRSDGVNVKNRCEQGALSKFINKAADGGITALHMAALNGYYDCVHLLLDLHANVTAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARCLSTLLILLARGASRMTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPRFPTSNHLSLPLQSALNIARECGFKSMGATSDDGDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNIQSEMIGSLGSIPCPLCRHGIISFVKLSGVTAKEKQLHLSLSICSPCILHTRDAEDQASTCTPEIRKNRVASVSSDVFCPVTCSPFPSAAIPLCTCNDGPCPTFESRDVGTEDESPRQLQTTPIDQDKLGGPRPERTSCSSMFWGRRSCSRENQCNSEINA 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6280251 6285756 - Lsi09G005840.1 Lsi09g00584 670197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00584 520 MobiDBLite consensus disorder prediction 466 499 - -
Lsi09g00584 520 SMART ANK_2a 111 141 IPR002110 GO:0005515
Lsi09g00584 520 SMART ANK_2a 77 106 IPR002110 GO:0005515
Lsi09g00584 520 SMART ANK_2a 44 73 IPR002110 GO:0005515
Lsi09g00584 520 SMART ANK_2a 220 260 IPR002110 GO:0005515
Lsi09g00584 520 SMART ANK_2a 177 206 IPR002110 GO:0005515
Lsi09g00584 520 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Lsi09g00584 520 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Lsi09g00584 520 PANTHER HOMEOBOX PROTEIN WARIAI 1 520 - -
Lsi09g00584 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 386 IPR013083 -
Lsi09g00584 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 520 - -
Lsi09g00584 520 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Lsi09g00584 520 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Lsi09g00584 520 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Lsi09g00584 520 SUPERFAMILY RING/U-box 322 382 - -
Lsi09g00584 520 ProSiteProfiles Ankyrin repeat profile. 220 260 IPR002110 GO:0005515
Lsi09g00584 520 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Lsi09g00584 520 Gene3D - 149 277 IPR036770 -
Lsi09g00584 520 Gene3D - 4 148 IPR036770 -
Lsi09g00584 520 SUPERFAMILY Ankyrin repeat 14 282 IPR036770 -
Lsi09g00584 520 ProSiteProfiles Zinc finger RING-type profile. 327 377 IPR001841 -
Lsi09g00584 520 SMART ring_2 327 376 IPR001841 -
Lsi09g00584 520 Pfam Ankyrin repeat 221 254 IPR002110 GO:0005515
Lsi09g00584 520 Pfam Ankyrin repeat 178 208 IPR002110 GO:0005515
Lsi09g00584 520 Pfam Ankyrin repeat 112 132 IPR002110 GO:0005515
Lsi09g00584 520 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Lsi09g00584 520 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00584 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - zju:107414468 898.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01419 Lsi-Chr1:12336766 Lsi09g00584 Lsi-Chr9:6280251 1.84E-34 dispersed
Lsi03g02104 Lsi-Chr3:32285584 Lsi09g00584 Lsi-Chr9:6280251 5.54E-23 dispersed
Lsi09g00584 Lsi-Chr9:6280251 Lsi11g00719 Lsi-Chr11:7756612 1.30E-136 dispersed
Lsi09g00584 Lsi-Chr9:6280251 Lsi10g01370 Lsi-Chr10:17857683 8.71E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00584 Lsi_Chr09 FPKM 10.444753 11.710095 18.495655 19.674051 12.015443 13.114147 12.836446 3.562772 2.851481 3.442993