Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00591 ATGGGGGCTTCCTTTGCCAAGGATTCCAATCTCCCTTCCTCTTCTTCCTCTTCCTCTTCCTCTTCCTCCGATTCGTCTTCTCTCGAAGACATACCGGAAAATTGTATTTCCATTATCTTCATGTACTTGGATCCTCCCGAGATCTGCAATCTTGCCTCTCTTAATCGTGCCTTTCGTGCTGCTTCGTCCGCTGATTTCGTTTGGGATTCCAAATTCCCTTCCAATTACGACTTCTTACTTCGTCGAGTTCTTCATCATCCCCAATTGAGCCAACCTAAGAAGGAGATCTTCGCTAGGCTAACTCGCCCTTATCTCTTCGATCATGCCACTAAGGAGGTTTGGTTGGATAAAAGTTCTGGGAAAAATTTTCTATCTATTTCATCCAAGGCTTTGAAGATTACAGGGATTGATGATAGAAGATATTGGAATTATATTCCAACTGATGAATCAAGNAAAATATATTATTATCGAAGACCAAAGTCTAAATTGGCCAGAGGAGAATTGGAGTTTGAGTTACCTAAGGGAAATTACAGTGTATATTTCAGGCTTCAATTGGGGAAAGGTTCAAAGAAATTTGGAAGAAGATTTGTAGAGTTGGATGAAGTTCATGGATGGGAAGTTAAGCCAGTGAGATTTGAAGTCTCAGTGTCCAATAATGCCCAAAAAGCTTCATCTGAGTGTTATTTAAACCAATTTGGGAAATGGGTTTTGTATAAAGTGGGAGATTTTAGTATTGAAACCCCTAATATTTTAGCCCAAATCAAATTTTCAATGATTCAAATTGATTGTACTCATACTAAAGGTGGCCTTTCTGTGGACTCTGTCTTCATTTCTCCCACTGATTTTAAGCCAACCTTCAAATGA 864 39.24 MGASFAKDSNLPSSSSSSSSSSSDSSSLEDIPENCISIIFMYLDPPEICNLASLNRAFRAASSADFVWDSKFPSNYDFLLRRVLHHPQLSQPKKEIFARLTRPYLFDHATKEVWLDKSSGKNFLSISSKALKITGIDDRRYWNYIPTDESXKIYYYRRPKSKLARGELEFELPKGNYSVYFRLQLGKGSKKFGRRFVELDEVHGWEVKPVRFEVSVSNNAQKASSECYLNQFGKWVLYKVGDFSIETPNILAQIKFSMIQIDCTHTKGGLSVDSVFISPTDFKPTFK 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6373555 6375592 + Lsi09G005910.1 Lsi09g00591 670204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00591 287 Gene3D - 13 122 - -
Lsi09g00591 287 PANTHER F-BOX PROTEIN PP2-A14 13 285 - -
Lsi09g00591 287 MobiDBLite consensus disorder prediction 7 26 - -
Lsi09g00591 287 PANTHER F-BOX PROTEIN PP2-A15 13 285 - -
Lsi09g00591 287 MobiDBLite consensus disorder prediction 1 26 - -
Lsi09g00591 287 SMART fbox_2 31 70 IPR001810 GO:0005515
Lsi09g00591 287 Pfam Phloem protein 2 124 279 IPR025886 -
Lsi09g00591 287 ProSiteProfiles F-box domain profile. 25 71 IPR001810 GO:0005515
Lsi09g00591 287 SUPERFAMILY F-box domain 17 100 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00591 - - - csv:101208233 434.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01414 Lsi-Chr7:20657229 Lsi09g00591 Lsi-Chr9:6373555 1.06E-90 dispersed
Lsi09g00591 Lsi-Chr9:6373555 Lsi06g01118 Lsi-Chr6:21468940 5.75E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g604 Blo06g01114 . . . . Bpe07g00950 . . . . . . . . . . . . . . . . . . Cla01g00547 Cam01g0572 Cec01g0562 Cco01g0588 Clacu01g0566 Cmu01g0538 Cre09g1969 . . . . . Csa05g00583 Chy09g00923 . . . Bda06g00670 Bda15g00737 . Bpe12g00417 Bma08g00341 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00591 . . Cme09g01452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00591 Lsi_Chr09 FPKM 11.384455 13.46768 13.822375 15.335655 14.70337 15.02066 14.530835 13.895274 12.625321 13.917171