Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00593 ATGGCAGCTTCTCGGGTGGCTGGAGGATTAGCGCAATCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGCTACTGTTAAATCTCACTTGGGCTCATCTTATGGAAACTCATCAAATTCAATTCCAGGAACTGGCCATTCACATTTGGGTCCAGTTTCTGGGGACACTAATGGCGTGTTTAATAGTGTGGCAAACTCGGGACCAAGTGTTGGGGCAAGTTCTCTGGTTACAGACGCAAACTCTGCACTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCGGAATCATACATGCGATTACCCACGTCGCCTATGTCTTTTACATCAAATAACATGAGTATGTCAGGTGCATCACTCATTGATGCATCTTCTGTACTGCAGCACAATTCTCAGCAGGATCATAATGCTCCCCAATTGCCACAGACCCAGCCACAGGCCCGACAAGTTTCTTCAGGTGATGCATTACTGTCAAATTCACAAACCGTCCAAGCTTCACTCCCCATGGGTGCATGTGTCTCTGGATCTCTCATGACAGATCCCAATAGTTATTCTCAATCACAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGGTACTACAACAGCTATTGCAGAGACAAGATTCCATGCAGTTGCAAGGTCGTAATACACCTCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGACAACAGCAACAAATTTTTCAGTCTTTGCCTCCTTTGCAGAGAGCTCATATGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAGCAACAGGCAATACAGCCTGTAAATGCTATGAAGCGGCCTCATGATGGTGGTGTATGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACTGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATAACAATGTTGGGCATCATGCACTTGGTGTTTTCCCTCAAGCAGCTATGGATGCATGGCAGTGTGATATTTGTGGTTCAAAATCTGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGACTTAATGAGATCAAATTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAATTCAGATATTCATCTGGAATTATGATGTTAGAATATGGAAAAGCAGTTCAAGAGAGTGTATACGAGCAGCTTCGTGTTGTTCGGGAGGGACAGCTTCGTATCATATTTACTCATGAATTGAAGATTTTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCACGTAGACTGGTTGCACCTCAGGTGAATCAGTTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCTGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTTGCCAAGAGTCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTCAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATTGATTTCTGTAGGGAGCAGAAAACCGGACCAGTTGCCAAGCTGCAGATGCAAAAAATGCAAGAGATTGAGCAGGTTGCTACTGCTCAGGGTCTGCCAACTGATCGTAACACCCTTAGTCGAATGGTCGCCCTGCATCCTGGGCTGAACAACCAAATGAATAGCCAAAATCACCTTGGCAGCAGAGGAACTTTGAGCGGTTCGGCACAAGCTGCGTTGGCACTGTCTAACTACCAGAATCTGCTAATGAGACAGAACTCGATGAATTCAACAAGTTCAAACCCACTCCAGCAGGAGACATCATCGTCATTCAATAACTCAAACCAGAGTCCTTCATCAAGCTTTCATGGGACAACTGCTATAACATCGGCACCGATGCAGAACTTGCCCAGCAGTGGTCTTTCAAGTCCTAATCCGCTTCAGCAACAATCTCAAGTTCAACAGCAACTGCATCAGCGCCCGAACACCAACAACTTACTCGTGCAAAATCATCCTCAGAGTACGCAAGGTAACGGCAACAATAATCAGGCTATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGGGGAGGCCAACAGCAACCACTTTCTGGATCAAACACAAAAGGAAGCATTGCCGGAACTTATACAGGCTACGGAGGCAGCTCTTCTGTGGCGGCTGCAGGCACAGCCAATGCATCTGGTAGTAATACGCCTGCCCCAAGCCGAAGTAATAGTTTCAAAAGTGCTTCAACTGGTGATGTACCAGCAGTCGGTGCTCGTAGCAGTGGGTTCAACCAAAGAACTGCAGATTTGCCACAAAATCTTCATTTGGATGAGGATATAATCCAGGATATAGCCCATGATTTTACAGATAATGGGTTTTTTAGCAGTGATCTTGATGATAATATGTGCTTCACCTGGAAAGGTCAACTAACT 2556 45.5 MAASRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSSYGNSSNSIPGTGHSHLGPVSGDTNGVFNSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSMSGASLIDASSVLQHNSQQDHNAPQLPQTQPQARQVSSGDALLSNSQTVQASLPMGACVSGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHMQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVAKLQMQKMQEIEQVATAQGLPTDRNTLSRMVALHPGLNNQMNSQNHLGSRGTLSGSAQAALALSNYQNLLMRQNSMNSTSSNPLQQETSSSFNNSNQSPSSSFHGTTAITSAPMQNLPSSGLSSPNPLQQQSQVQQQLHQRPNTNNLLVQNHPQSTQGNGNNNQAMQHQMIQQLLQISNNSGGGQQQPLSGSNTKGSIAGTYTGYGGSSSVAAAGTANASGSNTPAPSRSNSFKSASTGDVPAVGARSSGFNQRTADLPQNLHLDEDIIQDIAHDFTDNGFFSSDLDDNMCFTWKGQLT 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6389304 6402723 - Lsi09G005930.1 Lsi09g00593 670206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00593 852 MobiDBLite consensus disorder prediction 768 806 - -
Lsi09g00593 852 MobiDBLite consensus disorder prediction 1 59 - -
Lsi09g00593 852 MobiDBLite consensus disorder prediction 768 791 - -
Lsi09g00593 852 Pfam LIM-domain binding protein 297 556 IPR029005 -
Lsi09g00593 852 MobiDBLite consensus disorder prediction 135 162 - -
Lsi09g00593 852 MobiDBLite consensus disorder prediction 8 59 - -
Lsi09g00593 852 PANTHER LIM DOMAIN-BINDING PROTEIN 175 848 IPR029005 -
Lsi09g00593 852 MobiDBLite consensus disorder prediction 628 693 - -
Lsi09g00593 852 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 152 - -
Lsi09g00593 852 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 175 848 - -
Lsi09g00593 852 PANTHER LIM DOMAIN-BINDING PROTEIN 5 152 IPR029005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01257 Lsi09g00593 CCT
Lsi05g01257 Lsi09g00593 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01257 Lsi-Chr5:20332578 Lsi09g00593 Lsi-Chr9:6389304 0 dispersed
Lsi08g00515 Lsi-Chr8:13068820 Lsi09g00593 Lsi-Chr9:6389304 8.51E-113 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00593 - - bhj:120092747 1378.62