Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00596 ATGGATTTTTCCGATGCTTTTTCTTCTTCGCAACTTTTTACATCTTGCCACCGTTCAAATCACTCCGACGAGGAGTTTCTCTTGGCGTCCCGATATCCGAAGAAGAGAGCCGGCAGAAAGAAGTTTAAGGAAACTCGTCACCCTATTTTCCGTGGAGTGCGACGGCGGAATTCCGGCAAGTGGGTTTGTGAAGTTAGAGAGCCCAATAAAAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGTGCTCACGATGTTGCTGCCATCGCCCTCCGTGGTCGATCTGCTTGTCTTAATTTCGCTGACTCTGCCTCCACGCTTCCCATTCCGGCTACTGTCGATCCCAAGGATATTCAGCGGGCTGCGGCTCAGGCTGCGGAAGCCTTCCGCCCGCCGGAGGATCAATTGAGGCCTGCTGCCGTGGCGGTGGCGGCAGAGGAGGAGGAAGAGGAAGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGGTGTTTGGAATGCCGGGGTTGTTGGCGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCGAATTGTGTGGGGAACGACAATGACGACGTCTATGGAGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCGATTTGA 651 53.3 MDFSDAFSSSQLFTSCHRSNHSDEEFLLASRYPKKRAGRKKFKETRHPIFRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPIPATVDPKDIQRAAAQAAEAFRPPEDQLRPAAVAVAAEEEEEEEEEVFYLDEEAVFGMPGLLADMAEAMLLPPPNCVGNDNDDVYGVNSMDFDADMSLWSYSI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6458757 6459407 + Lsi09G005960.1 Lsi09g00596 670209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00596 216 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 9 216 - -
Lsi09g00596 216 SUPERFAMILY DNA-binding domain 49 108 IPR016177 GO:0003677
Lsi09g00596 216 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Lsi09g00596 216 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Lsi09g00596 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 216 IPR045277 GO:0003700
Lsi09g00596 216 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Lsi09g00596 216 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Lsi09g00596 216 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Lsi09g00596 216 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Lsi09g00596 216 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00309 Lsi-Chr9:3150495 Lsi09g00596 Lsi-Chr9:6458757 6.39E-41 dispersed
Lsi09g00310 Lsi-Chr9:3187047 Lsi09g00596 Lsi-Chr9:6458757 9.98E-66 dispersed
Lsi09g00596 Lsi-Chr9:6458757 Lsi11g00240 Lsi-Chr11:2429121 3.56E-34 dispersed
Lsi09g00596 Lsi-Chr9:6458757 Lsi05g01266 Lsi-Chr5:20431416 4.85E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25884 PF00847 AP2 7.10E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00596 - - csv:101207745 331.643