Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g00596 | ATGGATTTTTCCGATGCTTTTTCTTCTTCGCAACTTTTTACATCTTGCCACCGTTCAAATCACTCCGACGAGGAGTTTCTCTTGGCGTCCCGATATCCGAAGAAGAGAGCCGGCAGAAAGAAGTTTAAGGAAACTCGTCACCCTATTTTCCGTGGAGTGCGACGGCGGAATTCCGGCAAGTGGGTTTGTGAAGTTAGAGAGCCCAATAAAAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGTGCTCACGATGTTGCTGCCATCGCCCTCCGTGGTCGATCTGCTTGTCTTAATTTCGCTGACTCTGCCTCCACGCTTCCCATTCCGGCTACTGTCGATCCCAAGGATATTCAGCGGGCTGCGGCTCAGGCTGCGGAAGCCTTCCGCCCGCCGGAGGATCAATTGAGGCCTGCTGCCGTGGCGGTGGCGGCAGAGGAGGAGGAAGAGGAAGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGGTGTTTGGAATGCCGGGGTTGTTGGCGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCGAATTGTGTGGGGAACGACAATGACGACGTCTATGGAGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCGATTTGA | 651 | 53.3 | MDFSDAFSSSQLFTSCHRSNHSDEEFLLASRYPKKRAGRKKFKETRHPIFRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPIPATVDPKDIQRAAAQAAEAFRPPEDQLRPAAVAVAAEEEEEEEEEVFYLDEEAVFGMPGLLADMAEAMLLPPPNCVGNDNDDVYGVNSMDFDADMSLWSYSI | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 6458757 | 6459407 | + | Lsi09G005960.1 | Lsi09g00596 | 670209 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g00596 | 216 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 9 | 216 | - | - | |
Lsi09g00596 | 216 | SUPERFAMILY | DNA-binding domain | 49 | 108 | IPR016177 | GO:0003677 | |
Lsi09g00596 | 216 | SMART | rav1_2 | 49 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00596 | 216 | Gene3D | AP2/ERF domain | 49 | 107 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi09g00596 | 216 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 9 | 216 | IPR045277 | GO:0003700 | |
Lsi09g00596 | 216 | CDD | AP2 | 48 | 108 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00596 | 216 | Pfam | AP2 domain | 48 | 98 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00596 | 216 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00596 | 216 | PRINTS | Ethylene responsive element binding protein signature | 72 | 88 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi09g00596 | 216 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g00309 | Lsi-Chr9:3150495 | Lsi09g00596 | Lsi-Chr9:6458757 | 6.39E-41 | dispersed | |
Lsi09g00310 | Lsi-Chr9:3187047 | Lsi09g00596 | Lsi-Chr9:6458757 | 9.98E-66 | dispersed | |
Lsi09g00596 | Lsi-Chr9:6458757 | Lsi11g00240 | Lsi-Chr11:2429121 | 3.56E-34 | dispersed | |
Lsi09g00596 | Lsi-Chr9:6458757 | Lsi05g01266 | Lsi-Chr5:20431416 | 4.85E-86 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25884 | PF00847 | AP2 | 7.10E-15 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g00596 | - | - | csv:101207745 | 331.643 |