Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00609 ATGATGAACAGATTAAGTGTTCTTGTTGCTGTTTCAATTGCAGCTTATTCAATTAGGCAGCTCACAATCAGATCATGGACCTCATTATTCTTGCCTACCAACTGTTCAGCTTATGCCTTTTCTAATTCTGTTTTTATCTTTGTTTCCTTTATTTACATAGAAAATGGAGAAGACGTGGAGAAGAACGGATTGGATGAAAAAGAAGAGGAAGCTAATTCAATAAATGATGCAACTAGTCAAGTTAATGGTAGAACCTCTGATCTTGAAGATGGAGATCATAGTTCAGATGAGTTTCGAGAACTTCTACCACGAGAGTTCGAACATCGGTCGCTTGATGACAATAAGAAAGAAGAAAAAGTGCCTGAAATCCAGATAGAAAACAATAAGATTGAATTGGAAAGGTTGCTGAAACTAGTGATGGAATTGGAGGAAAGGAAAGTGAAACTCGAAGGTGAATTGTTCATGTGCGACGGAATAAAATATAGTGAAACTGACGTTATGGAGTTACGAAAGCAGCTCGAGGCCAAGAATGATGATATCAGTATGCTTAATATCACAATCAGCTCTTTGCAGGCTGAGAGAAAGATTCTAAAAGAAGAGATAGTGAAGGGAGCATTGATGAAGAAGGAACTAGAGGAGGCTAGAGGCAAGATTAGAGAGCTGCAGAGGCAAATTCAGCTTGATGCAAACCAAACAAAAGAACATTTATTATTACTCAAACAACGAGTTTCCGCTTTGCAGGCGAAAGAGGAAGAGGCCGTCAAGAAAGAAGCAGAACTTTATAAGAAACAGAAAGCGGCGAAGGATTTCGAGGTAGAACTTGGGGAGCTTAAGCGGAAGAATCGAGAGCTTCAACACGAAAAGCAGGAACTAACTTCTAAACTAGAAGTTATGAAGGCCAGAATCAAAACACTGACTAAGATGGAAGAGAGTGAAATAATCACGAAGGAAAGAGAAGAGGCTCAAAAGTTAAAGAGTGAAAATGAGGATCTGATAAAGCAACTTGAAAGGCTTCAGATGAATAGGTTTAGTGAAGTTGAAGAGTTAGTCTACTTTCGTTGGATCAATGCTTGCTTGAGGTATGAGCTTCGGGACAACGAGATATCGGCAGGCGAATCCGCTCGTTATCTCAATAAGAGTTCAAGTCCAAAGTCAAAAGAGAAGGCAAAACAACTCATGATAGAGTATGCAGGATTGGAGTCTGGACAAGCAGAAACAGATCATGAAAGCAACTTTTCTCATCCATTCTCTTCTGGGATTGAAGATCTTGACAATACTTCAATTGATAGTTCAAGGAGCAGAACAAGTAGTTTCAATGAGAGGCCTAATATGAGTTTGAAGAAATTGATCAGAAACAAAGGTGGTTTGAGTGCTGTTTCGTTTCCGCGCATAATCGGTTCAAGCCACAGATGGAAGGATCCTTTAGAAGCAGTGGTGGCTCTGAGTGCTGAAACTTTAACTCTCTCAGAAGTTAGATTGCAAGTTTCTTCAAGAAAATCTGTCAACTCAGTTGCAACATCATTCCAACTGATGTCTAAAACAGTTGAAGAAAGTCTAAAACAAAAATATTCAACTTATAAAGAGCATCATAAGTTGGCCTTAGGGAGTGAGAAGAAAATCAAGGAAAAGGCTGAGAATGAAAGGGAAAAAAGTTCTGGTAACGCTTCGAGTCTGAATATAGAATACGACGACACTAGCATGAGAAAGAAACCTGCAATTTTACCCCTTCAACTTGCTCAAATGAAGATGAATAAAACTTCTTGTGATCCAAATAGCCAATATGACAATGATAGCAAAAATATGATCTCCAATCCAAATTCTAACGGAGGTGAAGGTCATCGAGGACCCGAGTTAGTTCGGTTCAATAAAAAAATGATGAAACTTGAGGTGAAAGCTGATATGGAAACTCAAGGAGACTTGGTTGTGGCATTGGCAATGGAAGTTAGAGAAGCGTCTTTCACCAACATGGAAGATGTCGTCTCCTTCGTTATATGGCTCGATGAAAAGTTATCTTCTTTGGTTGATGGTATGGAGATTCTCGAGCATTTCGATTGGCCCAAGTTAAAAACAGATGCATTAAGAGAAGCAGCCTTTGAATATCAGAAGCTGATGAAACTAAAAGAAGAAGTCTCTTCTTTTGTTGACAATCCCAAACTCACATGTGAAGTTGCTTTAAACAAAATGAACTCCTTGCTAGATAAGGTGGAGCAGAGTGTCTATGGATTGTTTCATACAAGGGACACGGCGAATTCGCGATACGAGGAACTCGGAATTCCCATGGATTGGTTGTTGGATTGTGGAGTTGTTGGCAAGATAAAGGTGTCATGTGTAGAATTGGCAAGGAAGTACATGAAACGCATAGTAAATGAACATAATGCACTGAGTGGACCTGAGAAAGAACCAAACAGAGAATTTTTGCTTTTCCAAGGAGTGCGATTTGCTTCTCGTGTTCATAAGGACTTCGTGGCTTGTTTTGCTACTCCATTTAATTTTGCAGGAGGCTTTGATTCCGAGAGCATGAAGGCATTTGAAGAGCTGAGAAGTCGTGTCCGTACAGAGGCAGGACAGAAAAATTGA 2577 39.62 MMNRLSVLVAVSIAAYSIRQLTIRSWTSLFLPTNCSAYAFSNSVFIFVSFIYIENGEDVEKNGLDEKEEEANSINDATSQVNGRTSDLEDGDHSSDEFRELLPREFEHRSLDDNKKEEKVPEIQIENNKIELERLLKLVMELEERKVKLEGELFMCDGIKYSETDVMELRKQLEAKNDDISMLNITISSLQAERKILKEEIVKGALMKKELEEARGKIRELQRQIQLDANQTKEHLLLLKQRVSALQAKEEEAVKKEAELYKKQKAAKDFEVELGELKRKNRELQHEKQELTSKLEVMKARIKTLTKMEESEIITKEREEAQKLKSENEDLIKQLERLQMNRFSEVEELVYFRWINACLRYELRDNEISAGESARYLNKSSSPKSKEKAKQLMIEYAGLESGQAETDHESNFSHPFSSGIEDLDNTSIDSSRSRTSSFNERPNMSLKKLIRNKGGLSAVSFPRIIGSSHRWKDPLEAVVALSAETLTLSEVRLQVSSRKSVNSVATSFQLMSKTVEESLKQKYSTYKEHHKLALGSEKKIKEKAENEREKSSGNASSLNIEYDDTSMRKKPAILPLQLAQMKMNKTSCDPNSQYDNDSKNMISNPNSNGGEGHRGPELVRFNKKMMKLEVKADMETQGDLVVALAMEVREASFTNMEDVVSFVIWLDEKLSSLVDGMEILEHFDWPKLKTDALREAAFEYQKLMKLKEEVSSFVDNPKLTCEVALNKMNSLLDKVEQSVYGLFHTRDTANSRYEELGIPMDWLLDCGVVGKIKVSCVELARKYMKRIVNEHNALSGPEKEPNREFLLFQGVRFASRVHKDFVACFATPFNFAGGFDSESMKAFEELRSRVRTEAGQKN 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6611630 6617339 - Lsi09G006090.1 Lsi09g00609 670222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00609 858 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 599 - -
Lsi09g00609 858 MobiDBLite consensus disorder prediction 537 562 - -
Lsi09g00609 858 Coils Coil 125 152 - -
Lsi09g00609 858 MobiDBLite consensus disorder prediction 586 616 - -
Lsi09g00609 858 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 626 856 - -
Lsi09g00609 858 Coils Coil 541 561 - -
Lsi09g00609 858 Coils Coil 246 341 - -
Lsi09g00609 858 MobiDBLite consensus disorder prediction 586 610 - -
Lsi09g00609 858 Coils Coil 166 200 - -
Lsi09g00609 858 MobiDBLite consensus disorder prediction 70 94 - -
Lsi09g00609 858 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 626 856 IPR040265 -
Lsi09g00609 858 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 1 599 IPR040265 -
Lsi09g00609 858 Coils Coil 204 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00609 - - - csv:101222579 1303.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02977 Lsi-Chr2:35871782 Lsi09g00609 Lsi-Chr9:6611630 6.41E-37 dispersed
Lsi05g01383 Lsi-Chr5:21712347 Lsi09g00609 Lsi-Chr9:6611630 4.78E-45 dispersed
Lsi04g00297 Lsi-Chr4:2985210 Lsi09g00609 Lsi-Chr9:6611630 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g251 . Blo16g01047 . Bda11g00222 Bpe13g01324 . . . Cmo04g01612 Cmo18g01069 . Cma18g01050 Car04g01590 Car18g00975 Sed06g1858 Cpe09g00269 Cpe01g01369 Bhi07g01378 Tan04g0905 Cmetu10g1207 Lac13g0451 Hepe10g1864 . . . . . . . . . Cone13ag0861 Cone19ag0861 . . . Csa05g02076 Chy10g01109 Cme10g00298 . . . Bda11g00222 . . . Bma06g00775 . . . . Cma15g01418 . Car15g01280 Cpe13g00031 . Bhi12g00819 . . . . . Lcy10g0877 Cla01g00560 Cam01g0583 Cec01g0575 Cco01g0599 Clacu01g0578 Cmu01g0549 Cre09g1958 Lsi09g00609 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012142 0 6 0 0 0 1 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 0 2 0 1 1 1 3 3 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00609 Lsi_Chr09 FPKM 3.577438 4.7252 5.046588 4.909133 6.851737 7.578329 7.272634 8.484879 7.153042 7.779984