Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00610 ATGGAGTTCAGTAGTTGCAAGGAGTTCAAGATTGGAAAATGTGAGGGCCAAAAGGAAGTGGATGGAGAAACCATGCCATTGGTTCTACAGCCTCCTGAACCAAACAAGGCTAACTTTGAGTCTCTTTTGTTGGCTCTCAAAAACAACACAGATTGGTTGGACCAAATGATTATCAAACACAGCGCTCTTTTGCTCCGAGGATATGATGTGTCGAACGCCGAGGAGTTCAACGACATCGTCGAAGCCTTCGGGGCGAATGCGTTAGGGATGGATGTAGAGTGGCTGCCAAATGGGGCGATGAAGACGATATTGGGACCGAGGTGCCTAACAAAGGTGTTCGATGGAAGGAAAGGAAGAAAAATGTGGTTTAACACCATGGTGGGGATGCACAGAAAGGAGCACAGCTCGGCTTTAATGGCGGACGGGACGGAGATTACAGAGAATGTAGTGAAGAGATGCCAGGAGATAATTGAAGAAGAAAGCATCCAATTCAAATGGGAAAAGGGGGATGTTCTGTTCTTAGATAACTATGCTTTGCTCCATGGAAGAAGGCCTTCTCTTCCTCCCAGAAGAGTCTTAGTTGCAACCTGCAAGTAG 597 46.73 MEFSSCKEFKIGKCEGQKEVDGETMPLVLQPPEPNKANFESLLLALKNNTDWLDQMIIKHSALLLRGYDVSNAEEFNDIVEAFGANALGMDVEWLPNGAMKTILGPRCLTKVFDGRKGRKMWFNTMVGMHRKEHSSALMADGTEITENVVKRCQEIIEEESIQFKWEKGDVLFLDNYALLHGRRPSLPPRRVLVATCK 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6627992 6630889 + Lsi09G006100.1 Lsi09g00610 670223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00610 198 Gene3D - 5 87 IPR042098 -
Lsi09g00610 198 Gene3D - 88 198 IPR042098 -
Lsi09g00610 198 PANTHER GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED 85 198 - -
Lsi09g00610 198 PANTHER GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED 6 85 - -
Lsi09g00610 198 Pfam Taurine catabolism dioxygenase TauD, TfdA family 118 194 IPR003819 GO:0016491
Lsi09g00610 198 SUPERFAMILY Clavaminate synthase-like 87 197 - -
Lsi09g00610 198 SUPERFAMILY Clavaminate synthase-like 10 85 - -
Lsi09g00610 198 PANTHER OS08G0383800 PROTEIN 85 198 - -
Lsi09g00610 198 PANTHER OS08G0383800 PROTEIN 6 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00610 - - - csv:101215542 225.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02984 Lsi-Chr2:35924432 Lsi09g00610 Lsi-Chr9:6627992 2.74E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g248 Blo01g00478 . Bda01g02103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0478 Cone9ag0490 . Csa05g02075 . . . . . . . Bpe02g02292 Bma01g00149 . . . . . Cma15g01419 . . Cpe13g00030 . Bhi12g00821 . . . . . Lcy10g0876 Cla01g00561 Cam01g0584 Cec01g0576 Cco01g0600 Clacu01g0579 Cmu01g0550 Cre09g1957 Lsi09g00610 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009172 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi09g00610 Lsi_Chr09 FPKM 11.847906 12.641623 8.256483 7.016792 6.679486 5.491741 6.261466 7.83257 8.229678 8.008084