Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g00611 ATGGCTTCAGATACTGGTTCCAGGGCGAGTTCAGCTGCCGATTCGTACATTGGAAGCTTGATAAGTTTGACTTCCAAGAGTGAAATTAGATACGAAGGCGTACTCTACAACATCAACACCGAAGAGTCCAGTATTGGACTAAGCAACGTCATTTTCAAGCTTGTATACGATTCACTATTTATTTATCTATTGTTTTGGGTAGTGAGATCGTTTGGAACAGAAGGGAGAAAGAAGGATGGCCCCCAAGTCCCTCCAAGTGATAAAGTTTTTGAGTACATCTTATTCCGTGGAAGTGATATCAAGGATTTGCAGGTTAAGTCATCTCCACCTGTTCAGCCGGCAGCGCCTATAAACAATGATCCGGCAATCATTCAATCTCACTATCCACCATCTGTTTCCACATCTACCAGCATGCATTCTGCTGTCAGTGGGTCATTACCTGATCATAGTTCCCACACAGCATTTGGATTCCCTCAGTCTAATTTTCAAGGTGGTTTGCCTCCATATCAACCTGGAGGCAACTTGGGATCCTGGGGAGCTTCTCCTCCGCCTCCTCCAAGTGCAAATGGCAGTGGACTTGCGATGCCCATGTATTGGCAAGGGTATTATGGCCCACCGAATGGGCTTCCTCAGTTACACCAGCAGTCGATTGTACGACCTCCTCCTGGTCTGTCAATACCTCCATCTCTGCAACAGTCAATGCAGTATCCTAACATTAATGCGTCTTTACCCACTGGAGCTTCAAAACAACCTGAAGTTCCATCTCCCTTGCTCTCTGGTAGTAATAGTTCTCCTAACTTGACCTCCACTGTTGTGCCCCCTCCAACTTTTTCAACAGCTTTGCCTATGTTCCCGTTTACTTCTATTTCTGAAACGTTGCCAAGTTCAGTTGCTAATAAGACAGCTGTTCCTACCCTTCCTGGAGCCCCAGTTAGTGTTAGTTTGCCAGTAGGTCCAATACTGTCTTCATTTTCTGGTGCAGATGTTAGTTCTGCCATACCACCAATCTCTAATGAACCTAATACAGTTTCTGGTCCGTCATTACTGTATCAAACTGTGTCTCAGTCAACTTCATCTGTAGTTGGAATATCCAACTCTCGTGCTGAATCTTCTGTACCTTCTCTAGTTACCCCTGGGCAGCTGTTGCAGTCTGGACCTGCTGCTGTGGTTTCGTCTCAATCCTCACATACAGTGCATAAGGATGTGGAAGTGGTCCAATCATCATCGTTAGAACCTTCTAAGCCAGTGACAACAGAGGCCCAGCCACCAATACTACCACTACCTGTACTGTCAAGGCCTGTCCAGAAGGCCAATGGTGCTCATTTTCAGGCTCGCCATTTTTACAGAGGACGTGAAAGAGGAAGAGGATCTGGGAGTTCTCGTCCGTTGACCAAATTTACGGAAGATTTTGATTTCATAGCCATGAACGAGAAATTCAACAAGGATGAAGTATGGGGAAATCTAGGTAAAGGTAATAAATCTCATCTCAAGGATAAGGAGGTGGATGGAAAGGTCAGTGATGAAGATGACCTTCAAGAAGAAGATGAAGGTGAACTCTCACAGTCTGGGATTAAGCCCTTGTATAACAAGGATGACTTCTTTGATTCACTCTCTTACAATGCTGTTGATAATGATCCTCAAAATGGGCGGACCAGATATTCAGAGCAAGTAAAGATAGACACAGAGACTTTTGGTGATTTTCCGAGGTATCGAGGTGGCCGAGGTGGCCGAGGTCCTGGACGTGGAGGGTATTTTCGTGGAGGATACCATGGAAGAGGATATGGCTATAATGGGAGGGGTCGGGGGCGGGGGCAAGGACAAGGACGATCATCATTTTATCGTTCATAA 1848 45.67 MASDTGSRASSAADSYIGSLISLTSKSEIRYEGVLYNINTEESSIGLSNVIFKLVYDSLFIYLLFWVVRSFGTEGRKKDGPQVPPSDKVFEYILFRGSDIKDLQVKSSPPVQPAAPINNDPAIIQSHYPPSVSTSTSMHSAVSGSLPDHSSHTAFGFPQSNFQGGLPPYQPGGNLGSWGASPPPPPSANGSGLAMPMYWQGYYGPPNGLPQLHQQSIVRPPPGLSIPPSLQQSMQYPNINASLPTGASKQPEVPSPLLSGSNSSPNLTSTVVPPPTFSTALPMFPFTSISETLPSSVANKTAVPTLPGAPVSVSLPVGPILSSFSGADVSSAIPPISNEPNTVSGPSLLYQTVSQSTSSVVGISNSRAESSVPSLVTPGQLLQSGPAAVVSSQSSHTVHKDVEVVQSSSLEPSKPVTTEAQPPILPLPVLSRPVQKANGAHFQARHFYRGRERGRGSGSSRPLTKFTEDFDFIAMNEKFNKDEVWGNLGKGNKSHLKDKEVDGKVSDEDDLQEEDEGELSQSGIKPLYNKDDFFDSLSYNAVDNDPQNGRTRYSEQVKIDTETFGDFPRYRGGRGGRGPGRGGYFRGGYHGRGYGYNGRGRGRGQGQGRSSFYRS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6633908 6640546 - Lsi09G006110.1 Lsi09g00611 670224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g00611 615 Pfam FDF domain 465 565 IPR019050 -
Lsi09g00611 615 ProSiteProfiles FFD box profile. 526 541 IPR025761 -
Lsi09g00611 615 CDD LSm14_N 13 105 IPR025609 -
Lsi09g00611 615 Pfam Scd6-like Sm domain 16 107 IPR025609 -
Lsi09g00611 615 MobiDBLite consensus disorder prediction 239 270 - -
Lsi09g00611 615 MobiDBLite consensus disorder prediction 126 191 - -
Lsi09g00611 615 MobiDBLite consensus disorder prediction 405 424 - -
Lsi09g00611 615 Gene3D - 6 110 - -
Lsi09g00611 615 ProSiteProfiles TFG box profile. 548 568 IPR025768 -
Lsi09g00611 615 MobiDBLite consensus disorder prediction 492 506 - -
Lsi09g00611 615 MobiDBLite consensus disorder prediction 565 615 - -
Lsi09g00611 615 ProSiteProfiles DFDF domain profile. 458 494 IPR025762 -
Lsi09g00611 615 SUPERFAMILY Sm-like ribonucleoproteins 15 110 IPR010920 -
Lsi09g00611 615 MobiDBLite consensus disorder prediction 126 167 - -
Lsi09g00611 615 PANTHER SCD6 PROTEIN-RELATED 5 603 - -
Lsi09g00611 615 MobiDBLite consensus disorder prediction 486 526 - -
Lsi09g00611 615 SMART FDF_2 464 568 IPR019050 -
Lsi09g00611 615 SMART LSM14_2 10 128 IPR025609 -
Lsi09g00611 615 PANTHER PROTEIN DECAPPING 5-LIKE 5 603 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi04g00298 Lsi09g00611 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00298 Lsi-Chr4:2998833 Lsi09g00611 Lsi-Chr9:6633908 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g00611 K18749 - csv:101215778 934.865